To cite {EpiEstim} in publications use:

Cori A, Nash R, Jombart T, Kamvar Z, Stockwin J, Thompson R, Bhatia S, Brizzi A, Dahlqwist E, FitzJohn R, Gruson H, Wardle J, van Gaalen R, Pollington T, Monticone P, ter Hoeven E, Polonsky J, Li S, Lessler J, Demarsh P, Ferguson N, Fraser C, Cauchemez S (2026). EpiEstim: Estimate Time Varying Reproduction Numbers from Epidemic Curves. R package version 2.4, https://github.com/mrc-ide/EpiEstim.

Please also consider citing our papers listed in the README of our GitHub repository.

Corresponding BibTeX entry:

  @Manual{,
    title = {EpiEstim: Estimate Time Varying Reproduction Numbers from
      Epidemic Curves},
    author = {Anne Cori and Rebecca Nash and Thibaut Jombart and Zhian
      N. Kamvar and Jake Stockwin and Robin Thompson and Sangeeta
      Bhatia and Andrea Brizzi and Elisabeth Dahlqwist and Rich
      FitzJohn and Hugo Gruson and Jack Wardle and Rolina {van Gaalen}
      and Tim Pollington and Pietro Monticone and Ewout {ter Hoeven}
      and Jonathan A. Polonsky and Shikun Li and Justin Lessler and P.
      Alex Demarsh and Neil M. Ferguson and Christophe Fraser and Simon
      Cauchemez},
    year = {2026},
    note = {R package version 2.4},
    url = {https://github.com/mrc-ide/EpiEstim},
  }