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"title": "EpiEstim Vignette", "author": "Rebecca Nash", "engine": "knitr::rmarkdown", "headings": [ "Input data", "Step A: Serial Interval", "Step B: Incidence", "Estimate R~t~", "Step C: estimate_R()", "Prior for R~t~", "Forecast future incidence", "Step D: Projections package", "Example A: Entire workflow", "Example B: Estimating R~t~ using non-parametric distribution", "Example C: Estimating R~t~ using infector-infected cases", "Example D: Estimating R~t~ using \"si_from_sample\"", "Example E: Estimating R~t~ using \"uncertain_si\"", "Example F: Changing the prior for estimating R~t~", "Example G: Changing the time window to estimate R~t~", "References" ], "created": "2021-04-09 14:20:37", "modified": "2026-03-27 14:45:56", "commits": 13 }, { "source": "MV_EpiEstim_vignette.Rmd", "filename": "MV_EpiEstim_vignette.html", "title": "MV-EpiEstim", "engine": "knitr::rmarkdown", "headings": [ "SARS-CoV-2 variants" ], "created": "2021-11-26 18:04:41", "modified": "2026-03-27 14:45:56", 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