{ "_id": "6ac39622192c10f297258cfd", "Package": "epp", "Title": "R Implementation of the EPP model for HIV epidemic estimates.", "Version": "0.4.4", "Authors@R": "person(\"Jeff\", \"Eaton\", email = \"jeffrey.eaton@imperial.ac.uk\", role = c(\"aut\", \"cre\"))", "Description": "This implements the EPP r-spline and r-trend models for\nHIV epidemic estimates.", "License": "GPL-3", "Encoding": "UTF-8", "Remotes": [ "jeffeaton/anclik" ], "RoxygenNote": "7.2.3", "Config/pak/sysreqs": "libxml2-dev", "Repository": "https://mrc-ide.r-universe.dev", "Date/Publication": "2023-12-12 00:43:22 UTC", "RemoteUrl": "https://github.com/jeffeaton/epp", "RemoteRef": "master", "RemoteSha": "e23e99af8068c4e77336e6ccbfdc296d5c91cd6c", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-10-05 12:15:28 UTC", "User": "root" }, "Author": "Jeff Eaton [aut, cre]", "Maintainer": "Jeff Eaton ", "_user": "mrc-ide", "_type": "src", "_file": "epp_0.4.4.tar.gz", "_fileid": "https://r2.ropensci.org/a4611107da3e55f80cf8a7ed5b8b1100942073cd2121c229c2c9ef5d7a646ea7", "_filesize": 127819, "_sha256": "a4611107da3e55f80cf8a7ed5b8b1100942073cd2121c229c2c9ef5d7a646ea7", "_expires": "2027-01-13T12:20:48.000Z", "_created": "2026-10-05T12:15:28.000Z", "_published": "2026-10-05T12:20:50.293Z", "_jobs": [ { "job": 111757234173, "time": 173, "config": "linux-devel-arm64", "r": "4.7.0", "check": "WARNING", "artifact": "11344776798" }, { "job": 111757234279, "time": 112, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "11344482864" }, { "job": 111757234183, "time": 85, "config": "linux-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "11344966007" }, { "job": 111757234295, "time": 143, "config": "linux-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "11344836605" }, { "job": 111757234200, "time": 115, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "11344403009" }, { "job": 111757234223, "time": 280, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "" }, { "job": 111757234127, "time": 113, "config": "macos-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "11344951261" }, { "job": 111757234167, "time": 174, "config": "macos-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "11344657807" }, { "job": 111756312936, "time": 146, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11344139472" }, { "job": 111757234656, "time": 85, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11344791496" }, { "job": 111757234334, "time": 173, "config": "windows-devel-arm64", "r": "4.7.0", "check": "WARNING", "artifact": "11345055862" }, { "job": 111757234276, "time": 104, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "11345010915" }, { "job": 111757234307, "time": 79, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "11345255088" }, { "job": 111757234328, "time": 190, "config": "windows-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "11345055928" }, { "job": 111757234444, "time": 80, "config": "windows-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "11344741574" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/mrc-ide/actions/runs/37307976682", "_status": "success", "_upstream": "https://github.com/jeffeaton/epp", "_commit": { "id": "e23e99af8068c4e77336e6ccbfdc296d5c91cd6c", "author": "jeffeaton ", "committer": "jeffeaton ", "message": "update read_epp_data() to read survey ART coverage\n", "time": 1702341802 }, "_maintainer": { "name": "Jeff Eaton", "email": "jeffrey.eaton@imperial.ac.uk", "login": "jeffeaton", "description": "", "uuid": 7427899 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.1.0", "role": "Depends" }, { "package": "mvtnorm", "role": "Imports" }, { "package": "anclik", "version": ">= 0.3", "role": "Imports" }, { "package": "xml2", "role": "Imports" } ], "_owner": "jeffeaton", "_selfowned": false, "_usedby": 5, "_updates": [], "_tags": [], "_stars": 4, "_contributors": [ { "user": "jeffeaton", "count": 106, "uuid": 7427899 } ], "_userbio": { "uuid": 25453642, "type": "organization", "name": "MRC Centre for Global Infectious Disease Analysis", "followers": 164, "description": "MRC Centre hosted within the Department of Infectious Disease Epidemiology at Imperial College London" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/epp" }, "_devurl": "https://github.com/jeffeaton/epp", "_searchresults": 8, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/epp.html", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt" ], "_cranurl": false, "_exports": [ "fitmod", "fnCreateEPPFixPar", "fnCreateEPPSubpops", "fnCreateLikDat", "fnCreateParam", "fnPregPrev", "fnPrepareHHSLikData", "IMIS", "incid", "ll", "prepare_ancrtcens_likdat", "prepare_epp_fit", "prev", "read_epp_data", "read_epp_input", "read_epp_subpops", "read_spt", "read_spu", "simfit", "simmod", "update.eppfp" ], "_help": [ { "page": "dot-parse_array", "title": "Parse java array from EPP .xml file", "topics": [ ".parse_array" ] }, { "page": "dot-parse_matrix", "title": "Parse java matrix from EPP .xml file", "topics": [ ".parse_matrix" ] }, { "page": "get_eppxml_workset", "title": "Return workset with names from EPP .xml file", "topics": [ "get_eppxml_workset" ] }, { "page": "prepare_ancsite_likdat", "title": "Prepare site-level ANC prevalence data for EPP random-effects likelihood", "topics": [ "prepare_ancsite_likdat" ] }, { "page": "read_epp_data", "title": "Read EPP fitting surveillance data", "topics": [ "read_epp_data" ] }, { "page": "read_epp_subpops", "title": "Read EPP subpopulation configuration", "topics": [ "read_epp_subpops" ] }, { "page": "read_epp_workset_options", "title": "Read EPP Workset Options", "topics": [ "read_epp_workset_options" ] }, { "page": "read_eppxml_results", "title": "Read Bayesian Median outputs from XML", "topics": [ "read_eppxml_results" ] } ], "_rundeps": [ "anclik", "cli", "mvtnorm", "rlang", "xml2" ], "_score": 2.778151250383644, "_indexed": false, "_nocasepkg": "epp", "_universes": [ "mrc-ide" ], "_binaries": [ { "r": "4.5.3", "os": "mac", "version": "0.4.4", "date": "2026-09-05T17:22:13.000Z", "arch": "x86_64", "commit": "e23e99af8068c4e77336e6ccbfdc296d5c91cd6c", "fileid": "https://r2.ropensci.org/37c96d4cc03d4aae05491c42c662a703996f4d8876db744426ea4975773e8e6c", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/mrc-ide/actions/runs/33980467928" }, { "r": "4.7.0", "os": "linux", "version": "0.4.4", "date": "2026-10-05T12:18:24.000Z", "distro": "resolute", "arch": "aarch64", "commit": "e23e99af8068c4e77336e6ccbfdc296d5c91cd6c", "fileid": "https://r2.ropensci.org/f5d146db8caac20634f74b4c51a8c4e8f3b7e9dc46102a112682c30265262c32", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/mrc-ide/actions/runs/37307976682" }, { "r": "4.7.0", "os": "linux", "version": "0.4.4", "date": "2026-10-05T12:17:21.000Z", "distro": "resolute", "arch": "x86_64", "commit": "e23e99af8068c4e77336e6ccbfdc296d5c91cd6c", "fileid": "https://r2.ropensci.org/10b0259a4fbc85a517e4cf8f420fd100d6b7ee7ac3121a42a1e8bf5ac4bf47ac", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/mrc-ide/actions/runs/37307976682" }, { "r": "4.6.1", "os": "linux", "version": "0.4.4", "date": "2026-10-05T12:16:59.000Z", "distro": "resolute", "arch": "aarch64", "commit": "e23e99af8068c4e77336e6ccbfdc296d5c91cd6c", "fileid": "https://r2.ropensci.org/2cd8f07899dfc0280fcfd0442b3b28a4a5d94b4dc628a16f89b0d351f154d271", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/mrc-ide/actions/runs/37307976682" }, { "r": "4.6.1", "os": "linux", "version": "0.4.4", "date": "2026-10-05T12:17:50.000Z", "distro": "resolute", "arch": "x86_64", "commit": "e23e99af8068c4e77336e6ccbfdc296d5c91cd6c", "fileid": "https://r2.ropensci.org/031dd7b4ab27cfa933153d3526f20e6afa663aac32934a3161f87812879d69b4", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/mrc-ide/actions/runs/37307976682" }, { "r": "4.5.3", "os": "mac", "version": "0.4.4", "date": "2026-10-05T12:17:23.000Z", "arch": "aarch64", "commit": "e23e99af8068c4e77336e6ccbfdc296d5c91cd6c", "fileid": "https://r2.ropensci.org/14ea19fa8bb48b386f3cb70996bd3515a27d21882ffb2777ee58abbe5c8369e8", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/mrc-ide/actions/runs/37307976682" }, { "r": "4.6.1", "os": "mac", "version": "0.4.4", "date": "2026-10-05T12:17:18.000Z", "arch": "aarch64", "commit": "e23e99af8068c4e77336e6ccbfdc296d5c91cd6c", "fileid": "https://r2.ropensci.org/c6c5d39147daed156016012a3b102c1ba55a13bb2d269a63aacf08f8b71dc295", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/mrc-ide/actions/runs/37307976682" }, { "r": "4.6.1", "os": "mac", "version": "0.4.4", "date": "2026-10-05T12:18:12.000Z", "arch": "x86_64", "commit": "e23e99af8068c4e77336e6ccbfdc296d5c91cd6c", "fileid": "https://r2.ropensci.org/9639af5ee41e850e6f8b6e1f0cb15342a85e09de1f03576c3ac6cab061fafc30", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/mrc-ide/actions/runs/37307976682" }, { "r": "4.6.0", "os": "wasm", "version": "0.4.4", "date": "2026-10-05T12:17:07.000Z", "arch": "emscripten", "commit": "e23e99af8068c4e77336e6ccbfdc296d5c91cd6c", "fileid": "https://r2.ropensci.org/a9b958542a71fb4c2a86fd9b4e6212131c67147f0c2ad28fd4370dfe1e4d4970", "status": "success", "buildurl": "https://github.com/r-universe/mrc-ide/actions/runs/37307976682" }, { "r": "4.7.0", "os": "win", "version": "0.4.4", "date": "2026-10-05T12:18:12.000Z", "arch": "aarch64", "commit": "e23e99af8068c4e77336e6ccbfdc296d5c91cd6c", "fileid": "https://r2.ropensci.org/bfb178be6fd761e8947d38e53b23905139813b44ad9664106315635db411dc1f", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/mrc-ide/actions/runs/37307976682" }, { "r": "4.7.0", "os": "win", "version": "0.4.4", "date": "2026-10-05T12:16:35.000Z", "arch": "x86_64", "commit": "e23e99af8068c4e77336e6ccbfdc296d5c91cd6c", "fileid": "https://r2.ropensci.org/bedbf6f0dc346ff509320a93be941bfbb6cfb8462298dfdb03472c3c247ec36b", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/mrc-ide/actions/runs/37307976682" }, { "r": "4.5.3", "os": "win", "version": "0.4.4", "date": "2026-10-05T12:16:35.000Z", "arch": "x86_64", "commit": "e23e99af8068c4e77336e6ccbfdc296d5c91cd6c", "fileid": "https://r2.ropensci.org/8ada9042524bcf8f9df3ebc2a335fb2d2e49694877e6080f82ef11239fd830c9", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/mrc-ide/actions/runs/37307976682" }, { "r": "4.6.1", "os": "win", "version": "0.4.4", "date": "2026-10-05T12:18:31.000Z", "arch": "aarch64", "commit": "e23e99af8068c4e77336e6ccbfdc296d5c91cd6c", "fileid": "https://r2.ropensci.org/f159ccef56c6d447b62660baed4e569eb75da958d1e929c17cbbb5f760b3ffe0", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/mrc-ide/actions/runs/37307976682" }, { "r": "4.6.1", "os": "win", "version": "0.4.4", "date": "2026-10-05T12:16:36.000Z", "arch": "x86_64", "commit": "e23e99af8068c4e77336e6ccbfdc296d5c91cd6c", "fileid": "https://r2.ropensci.org/23778ba1ccc4e6a3bd7126abcb252ec26014b8573573824a674a856e87f94c83", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/mrc-ide/actions/runs/37307976682" } ] }