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  "Title": "An individual based model for malaria",
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  "Description": "Specifies the latest and greatest malaria model.",
  "License": "MIT + file LICENSE",
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  "Date/Publication": "2026-03-04 16:10:17 UTC",
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    "run_resumable_simulation",
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    "set_tbv",
    "SP_AQ_params",
    "steph_params"
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      "table": true,
      "tojson": true
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      "table": true,
      "tojson": true
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      "table": false,
      "tojson": true
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    {
      "page": "AL_params",
      "title": "Preset parameters for the AL drug (P. falciparum)",
      "topics": [
        "AL_params"
      ]
    },
    {
      "page": "arab_params",
      "title": "Preset parameters for the An. arabiensis vector",
      "topics": [
        "arab_params"
      ]
    },
    {
      "page": "calculate_carrying_capacity",
      "title": "Calculate the vector carrying capacity",
      "topics": [
        "calculate_carrying_capacity"
      ]
    },
    {
      "page": "CorrelationParameters",
      "title": "Class: Correlation parameters",
      "topics": [
        "CorrelationParameters"
      ]
    },
    {
      "page": "CQ_params_vivax",
      "title": "Preset parameters for the CQ drug (P. vivax)",
      "topics": [
        "CQ_params_vivax"
      ]
    },
    {
      "page": "CQ_PQ_params_vivax",
      "title": "Preset parameters for the CQ-PQ drug (P. vivax)",
      "topics": [
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    },
    {
      "page": "CQ_TQ_params_vivax",
      "title": "Preset parameters for the CQ-TQ drug (P. vivax)",
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      "title": "create a PEV profile",
      "topics": [
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      "page": "create_progress_process",
      "title": "Create progress process",
      "topics": [
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    },
    {
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      "title": "Preset parameters for the DHA-PQP drug (P. falciparum)",
      "topics": [
        "DHA_PQP_params"
      ]
    },
    {
      "page": "find_birthrates",
      "title": "Calculate the birthrate for a population in equilibrium",
      "topics": [
        "find_birthrates"
      ]
    },
    {
      "page": "fun_params",
      "title": "Preset parameters for the An. funestus vector",
      "topics": [
        "fun_params"
      ]
    },
    {
      "page": "gamb_params",
      "title": "Preset parameters for the An. gambiae s.s vector",
      "topics": [
        "gamb_params"
      ]
    },
    {
      "page": "get_antimalarial_resistance_parameters",
      "title": "Retrieve resistance parameters",
      "topics": [
        "get_antimalarial_resistance_parameters"
      ]
    },
    {
      "page": "get_correlation_parameters",
      "title": "Get default correlation parameters",
      "topics": [
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      ]
    },
    {
      "page": "get_init_carrying_capacity",
      "title": "Get initialised carrying capacity for each species",
      "topics": [
        "get_init_carrying_capacity"
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    },
    {
      "page": "get_parameters",
      "title": "Get model parameters",
      "topics": [
        "get_parameters"
      ]
    },
    {
      "page": "kol_params",
      "title": "Preset parameters for the An. koliensis vector",
      "topics": [
        "kol_params"
      ]
    },
    {
      "page": "parameter_draws_pf",
      "title": "Parameter draws (P. falciparum)",
      "topics": [
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      ]
    },
    {
      "page": "parameter_draws_pv",
      "title": "Parameter draws (P. vivax)",
      "topics": [
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    },
    {
      "page": "parameterise_mosquito_equilibrium",
      "title": "Parameterise total_M and carrying capacity for mosquitos from EIR",
      "topics": [
        "parameterise_mosquito_equilibrium"
      ]
    },
    {
      "page": "parameterise_total_M",
      "title": "Parameterise total_M",
      "topics": [
        "parameterise_total_M"
      ]
    },
    {
      "page": "parasite_parameters",
      "title": "Parasite parameters",
      "topics": [
        "parasite_parameters"
      ]
    },
    {
      "page": "peak_season_offset",
      "title": "Calculate the yearly offset (in timesteps) for the peak mosquito season",
      "topics": [
        "peak_season_offset"
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    },
    {
      "page": "r21_booster_profile",
      "title": "R21 booster vaccine profile",
      "topics": [
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    },
    {
      "page": "r21_profile",
      "title": "R21 vaccine profile",
      "topics": [
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    },
    {
      "page": "rtss_booster_profile",
      "title": "RTS,S booster vaccine profile",
      "topics": [
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    },
    {
      "page": "rtss_profile",
      "title": "RTS,S vaccine profile",
      "topics": [
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    },
    {
      "page": "run_metapop_simulation",
      "title": "Run a metapopulation model",
      "topics": [
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      ]
    },
    {
      "page": "run_resumable_simulation",
      "title": "Run the simulation in a resumable way",
      "topics": [
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      ]
    },
    {
      "page": "run_simulation",
      "title": "Run the simulation",
      "topics": [
        "run_simulation"
      ]
    },
    {
      "page": "run_simulation_with_repetitions",
      "title": "Run the simulation with repetitions",
      "topics": [
        "run_simulation_with_repetitions"
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    },
    {
      "page": "set_antimalarial_resistance",
      "title": "Parameterise antimalarial resistance",
      "topics": [
        "set_antimalarial_resistance"
      ]
    },
    {
      "page": "set_bednets",
      "title": "Parameterise a bed net strategy",
      "topics": [
        "set_bednets"
      ]
    },
    {
      "page": "set_carrying_capacity",
      "title": "Parameterise custom baseline carrying capacity",
      "topics": [
        "set_carrying_capacity"
      ]
    },
    {
      "page": "set_clinical_treatment",
      "title": "Parameterise clinical treatment",
      "topics": [
        "set_clinical_treatment"
      ]
    },
    {
      "page": "set_demography",
      "title": "Parameterise variable deathrates",
      "topics": [
        "set_demography"
      ]
    },
    {
      "page": "set_drugs",
      "title": "Parameterise drugs to use in the model",
      "topics": [
        "set_drugs"
      ]
    },
    {
      "page": "set_epi_outputs",
      "title": "Parameterise age grouped output rendering",
      "topics": [
        "set_epi_outputs"
      ]
    },
    {
      "page": "set_equilibrium",
      "title": "Set equilibrium",
      "topics": [
        "set_equilibrium"
      ]
    },
    {
      "page": "set_mass_pev",
      "title": "Parameterise a vaccine mass distribution strategy",
      "topics": [
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      ]
    },
    {
      "page": "set_mda",
      "title": "Parameterise a Mass Drug Administration",
      "topics": [
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      ]
    },
    {
      "page": "set_parameter_draw",
      "title": "Use parameter draw from the join posterior",
      "topics": [
        "set_parameter_draw"
      ]
    },
    {
      "page": "set_pev_epi",
      "title": "Parameterise a pre-erythrocytic vaccine with an EPI strategy",
      "topics": [
        "set_pev_epi"
      ]
    },
    {
      "page": "set_pmc",
      "title": "Parameterise a perennial malaria chemoprevention (PMC, formerly IPIi)",
      "topics": [
        "set_pmc"
      ]
    },
    {
      "page": "set_smc",
      "title": "Parameterise a Seasonal Malaria Chemoprevention",
      "topics": [
        "set_smc"
      ]
    },
    {
      "page": "set_species",
      "title": "Parameterise the mosquito species to use in the model",
      "topics": [
        "set_species"
      ]
    },
    {
      "page": "set_spraying",
      "title": "Parameterise an indoor spraying strategy",
      "topics": [
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    },
    {
      "page": "set_tbv",
      "title": "Parameterise an TBV strategy",
      "topics": [
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    },
    {
      "page": "SP_AQ_params",
      "title": "Preset parameters for the SP-AQ drug (P. falciparum)",
      "topics": [
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    },
    {
      "page": "steph_params",
      "title": "Preset parameters for the An. stephensi vector",
      "topics": [
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