{
  "_id": "6a5efc429baadeef8ab58272",
  "Package": "montagu",
  "Title": "Interface with 'montagu'",
  "Version": "0.6.1",
  "Description": "Client for interacting with the montagu API, and\nauthentication with the montagu OrderlyWeb instance.  This\npackage is part of montagu.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Authors@R": "c(person(\"Rich\", \"FitzJohn\", role = c(\"aut\", \"cre\"),\nemail = \"rich.fitzjohn@gmail.com\"),\nperson(\"Wes\", \"Hinsley\", role = \"aut\"))",
  "URL": "https://github.com/vimc/montagu-r",
  "BugReports": "https://github.com/vimc/montagu-r/issues",
  "RoxygenNote": "6.1.1",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "libssl-dev",
  "Repository": "https://mrc-ide.r-universe.dev",
  "Date/Publication": "2019-10-08 10:01:59 UTC",
  "RemoteUrl": "https://github.com/vimc/montagu-r",
  "RemoteRef": "master",
  "RemoteSha": "3e9359af079f7eee08e5b60a240fcc4db8d9e09e",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-21 04:54:29 UTC",
    "User": "root"
  },
  "Author": "Rich FitzJohn [aut, cre],\nWes Hinsley [aut]",
  "Maintainer": "Rich FitzJohn <rich.fitzjohn@gmail.com>",
  "_user": "mrc-ide",
  "_type": "src",
  "_file": "montagu_0.6.1.tar.gz",
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  "_created": "2026-07-21T04:54:29.000Z",
  "_published": "2026-07-21T04:57:38.293Z",
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  "_buildurl": "https://github.com/r-universe/mrc-ide/actions/runs/29802326452",
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    "type": "organization",
    "name": "MRC Centre for Global Infectious Disease Analysis",
    "followers": 160,
    "description": "MRC Centre hosted within the Department of Infectious Disease Epidemiology at Imperial College London"
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  "_devurl": "https://github.com/vimc/montagu-r",
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  "_rbuild": "4.6.1",
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
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    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
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  "_cranurl": false,
  "_exports": [
    "montagu_burden_estimate_set_clear",
    "montagu_burden_estimate_set_close",
    "montagu_burden_estimate_set_create",
    "montagu_burden_estimate_set_data",
    "montagu_burden_estimate_set_info",
    "montagu_burden_estimate_set_outcome_data",
    "montagu_burden_estimate_set_problems",
    "montagu_burden_estimate_set_upload",
    "montagu_burden_estimate_sets",
    "montagu_central_burden_estimate_template",
    "montagu_coverage_data",
    "montagu_coverage_info",
    "montagu_current_estimate_set_info",
    "montagu_current_estimate_set_problems",
    "montagu_demographic_data",
    "montagu_demographics_list",
    "montagu_disease",
    "montagu_diseases",
    "montagu_expectation",
    "montagu_expectation_applicable_scenarios",
    "montagu_expectation_countries",
    "montagu_expectation_outcomes",
    "montagu_expectations",
    "montagu_model",
    "montagu_model_list",
    "montagu_model_run_parameter_set_data",
    "montagu_model_run_parameter_set_info",
    "montagu_model_run_parameter_set_upload",
    "montagu_model_run_parameter_sets",
    "montagu_modelling_group",
    "montagu_modelling_group_members",
    "montagu_modelling_groups",
    "montagu_models",
    "montagu_orderlyweb_remote",
    "montagu_scenario_problems",
    "montagu_scenario_status",
    "montagu_scenarios",
    "montagu_server",
    "montagu_server_global_default_set",
    "montagu_server_global_list",
    "montagu_stochastic_burden_estimate_template",
    "montagu_touchstone_versions",
    "montagu_touchstones",
    "montagu_touchstones_for_scenario"
  ],
  "_help": [
    {
      "page": "montagu_burden_estimate_set_clear",
      "title": "Deletes all uploaded rows from an incomplete burden estimate set",
      "topics": [
        "montagu_burden_estimate_set_clear"
      ]
    },
    {
      "page": "montagu_burden_estimate_set_close",
      "title": "Closes a burden estimate set, marking it as complete.",
      "topics": [
        "montagu_burden_estimate_set_close"
      ]
    },
    {
      "page": "montagu_burden_estimate_set_create",
      "title": "Create a new burden estimate set",
      "topics": [
        "montagu_burden_estimate_set_create"
      ]
    },
    {
      "page": "montagu_burden_estimate_set_data",
      "title": "Retrieves the data for a specific burden estimate set.",
      "topics": [
        "montagu_burden_estimate_set_data"
      ]
    },
    {
      "page": "montagu_burden_estimate_set_info",
      "title": "Retrieves information about a specific burden estimate set.",
      "topics": [
        "montagu_burden_estimate_set_info"
      ]
    },
    {
      "page": "montagu_burden_estimate_set_outcome_data",
      "title": "Retrieve data for a particular outcoe of a burden estimate set, aggregated across country and disaggregated by either age or year.",
      "topics": [
        "montagu_burden_estimate_set_outcome_data"
      ]
    },
    {
      "page": "montagu_burden_estimate_set_problems",
      "title": "Retrieves information about a specific burden estimate set.",
      "topics": [
        "montagu_burden_estimate_set_problems"
      ]
    },
    {
      "page": "montagu_burden_estimate_set_upload",
      "title": "Deletes all uploaded rows from an incomplete burden estimate set",
      "topics": [
        "montagu_burden_estimate_set_upload"
      ]
    },
    {
      "page": "montagu_burden_estimate_sets",
      "title": "Retrieves list of estimate sets for a group, touchstone and scenario.",
      "topics": [
        "montagu_burden_estimate_sets"
      ]
    },
    {
      "page": "montagu_central_burden_estimate_template",
      "title": "Get central burden estimate template for an expectation",
      "topics": [
        "montagu_central_burden_estimate_template"
      ]
    },
    {
      "page": "montagu_coverage_data",
      "title": "Retrieve coverage data for a scenario, touchstone and modelling group.",
      "topics": [
        "montagu_coverage_data"
      ]
    },
    {
      "page": "montagu_coverage_info",
      "title": "Retrieve metadata for coverage sets for a particularly group, touchstone and scenario.",
      "topics": [
        "montagu_coverage_info"
      ]
    },
    {
      "page": "montagu_current_estimate_set_info",
      "title": "Get information on current estimate set for a scenario.",
      "topics": [
        "montagu_current_estimate_set_info"
      ]
    },
    {
      "page": "montagu_current_estimate_set_problems",
      "title": "Retrieve list of any problems in current estimate set for a scenario.",
      "topics": [
        "montagu_current_estimate_set_problems"
      ]
    },
    {
      "page": "montagu_demographic_data",
      "title": "Download demographic data for a given touchstone.",
      "topics": [
        "montagu_demographic_data"
      ]
    },
    {
      "page": "montagu_demographics_list",
      "title": "List the demographic data available for a given touchstone.",
      "topics": [
        "montagu_demographics_list"
      ]
    },
    {
      "page": "montagu_disease",
      "title": "Retrieve disease with given id.",
      "topics": [
        "montagu_disease"
      ]
    },
    {
      "page": "montagu_diseases",
      "title": "Retrieve list of all disease ids and names.",
      "topics": [
        "montagu_diseases"
      ]
    },
    {
      "page": "montagu_expectation",
      "title": "Get information about an expectation",
      "topics": [
        "montagu_expectation"
      ]
    },
    {
      "page": "montagu_expectation_applicable_scenarios",
      "title": "Get applicable scenarios for an expectation",
      "topics": [
        "montagu_expectation_applicable_scenarios"
      ]
    },
    {
      "page": "montagu_expectation_countries",
      "title": "Get country list for an expectation",
      "topics": [
        "montagu_expectation_countries"
      ]
    },
    {
      "page": "montagu_expectation_outcomes",
      "title": "Get expected outcomes",
      "topics": [
        "montagu_expectation_outcomes"
      ]
    },
    {
      "page": "montagu_expectations",
      "title": "Get expectations for a modelling group and touchstone",
      "topics": [
        "montagu_expectations"
      ]
    },
    {
      "page": "montagu_model",
      "title": "Retrieve model with given id.",
      "topics": [
        "montagu_model"
      ]
    },
    {
      "page": "montagu_model_list",
      "title": "Retrieve list of models for a given modelling_group_id.",
      "topics": [
        "montagu_model_list"
      ]
    },
    {
      "page": "montagu_model_run_parameter_set_data",
      "title": "Retrieve info about one model run parameter sets for a group and touchstone",
      "topics": [
        "montagu_model_run_parameter_set_data"
      ]
    },
    {
      "page": "montagu_model_run_parameter_set_info",
      "title": "Retrieve info about one model run parameter sets for a group and touchstone",
      "topics": [
        "montagu_model_run_parameter_set_info"
      ]
    },
    {
      "page": "montagu_model_run_parameter_set_upload",
      "title": "Upload a model_run_parameter_set to Montagu.",
      "topics": [
        "montagu_model_run_parameter_set_upload"
      ]
    },
    {
      "page": "montagu_model_run_parameter_sets",
      "title": "Retrieve a list of model run parameter sets for a group and touchstone",
      "topics": [
        "montagu_model_run_parameter_sets"
      ]
    },
    {
      "page": "montagu_modelling_group",
      "title": "Retrieve modelling_group with given modelling_group_id.",
      "topics": [
        "montagu_modelling_group"
      ]
    },
    {
      "page": "montagu_modelling_group_members",
      "title": "Retrieve list of members for a given modelling_group_id.",
      "topics": [
        "montagu_modelling_group_members"
      ]
    },
    {
      "page": "montagu_modelling_groups",
      "title": "Retrieve list of all modelling group ids and names.",
      "topics": [
        "montagu_modelling_groups"
      ]
    },
    {
      "page": "montagu_models",
      "title": "Retrieve list of all model ids, names, citations and groups.",
      "topics": [
        "montagu_models"
      ]
    },
    {
      "page": "montagu_orderlyweb_remote",
      "title": "orderly remote driver",
      "topics": [
        "montagu_orderlyweb_remote"
      ]
    },
    {
      "page": "montagu_scenario_problems",
      "title": "Retrieve a list of any problems with a scenario.",
      "topics": [
        "montagu_scenario_problems"
      ]
    },
    {
      "page": "montagu_scenario_status",
      "title": "Retrieve current status of a groups' scenario.",
      "topics": [
        "montagu_scenario_status"
      ]
    },
    {
      "page": "montagu_scenarios",
      "title": "Retrieve information about a scenario",
      "topics": [
        "montagu_scenarios"
      ]
    },
    {
      "page": "montagu_server",
      "title": "Create a handle to a montagu server",
      "topics": [
        "montagu_server"
      ]
    },
    {
      "page": "montagu_server_global_default_set",
      "title": "Set a global default montagu server",
      "topics": [
        "montagu_server_global_default_set"
      ]
    },
    {
      "page": "montagu_server_global_list",
      "title": "List known montagu servers",
      "topics": [
        "montagu_server_global_list"
      ]
    },
    {
      "page": "montagu_stochastic_burden_estimate_template",
      "title": "Get stochastic burden estimate template for an expectation",
      "topics": [
        "montagu_stochastic_burden_estimate_template"
      ]
    },
    {
      "page": "montagu_touchstone_versions",
      "title": "Retrieve list of all versions of a given touchstone.",
      "topics": [
        "montagu_touchstone_versions"
      ]
    },
    {
      "page": "montagu_touchstones",
      "title": "Retrieve touchstones a modelling group is responsible for.",
      "topics": [
        "montagu_touchstones"
      ]
    },
    {
      "page": "montagu_touchstones_for_scenario",
      "title": "Get touchstones that include this scenario",
      "topics": [
        "montagu_touchstones_for_scenario"
      ]
    }
  ],
  "_readme": "https://github.com/vimc/montagu-r/raw/master/README.md",
  "_rundeps": [
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      "source": "montagu_user_guide.Rmd",
      "filename": "montagu_user_guide.html",
      "title": "Montagu API from R",
      "author": "VIMC Technical Team",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Identify the Montagu Server",
        "Basic Information",
        "Touchstones",
        "Scenarios",
        "Expectations - years, ages, countries and outcomes",
        "Demography",
        "Gender",
        "Format",
        "Templates",
        "Coverage",
        "Long or Wide format",
        "Returning the full range of countries",
        "Burden Estimate Sets",
        "Creating a new burden estimate set",
        "Uploading data",
        "Plotting previous burden estimate sets",
        "Stochastic Runs",
        "Model Run Parameter Sets",
        "Appendix",
        "Models",
        "Demographic Sources"
      ],
      "created": "2019-02-19 12:38:54",
      "modified": "2019-10-08 10:01:59",
      "commits": 9
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