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  "Package": "specio",
  "Title": "Read Spectrum Files",
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  "Authors@R": "person(given = \"Robert\",\nfamily = \"Ashton\",\nrole = c(\"aut\", \"cre\"),\nemail = \"r.ashton@imperial.ac.uk\")",
  "Description": "Read data from Spectrum PJNZ file into R consumable format\nfor EPP.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
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  "Repository": "https://mrc-ide.r-universe.dev",
  "Date/Publication": "2021-04-12 16:43:50 UTC",
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    "User": "root"
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  "Author": "Robert Ashton [aut, cre]",
  "Maintainer": "Robert Ashton <r.ashton@imperial.ac.uk>",
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    "description": "🚀 Senior Software Engineer @ Avenir Health 🛠️ Building tools and web applications for epidemiologists and public health program planners",
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    "name": "MRC Centre for Global Infectious Disease Analysis",
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    "read_epp_subpops",
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    {
      "page": "read_art_pop",
      "title": "Extract ART population data from PJNZ file",
      "topics": [
        "read_art_pop"
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    },
    {
      "page": "read_epp_data",
      "title": "Read EPP fitting surveillance data",
      "topics": [
        "read_epp_data"
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    {
      "page": "read_epp_subpops",
      "title": "Read EPP subpopulation configuration.",
      "topics": [
        "read_epp_subpops"
      ]
    },
    {
      "page": "read_hiv_pop",
      "title": "Extract people living with HIV (PLHIV) from PJNZ file",
      "topics": [
        "read_hiv_pop"
      ]
    },
    {
      "page": "read_hivproj_param",
      "title": "Read params from DP and PJN file required for HIV model.",
      "topics": [
        "read_hivproj_param"
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    },
    {
      "page": "read_pjn_metadata",
      "title": "Get country name, iso3 code and spectrum region code from PJNZ",
      "topics": [
        "read_pjn_metadata"
      ]
    },
    {
      "page": "read_spt",
      "title": "Read best fitting HIV incidence and prevalence data from SPT file.",
      "topics": [
        "read_spt"
      ]
    },
    {
      "page": "read_spu",
      "title": "Read EPP uncertainty results from SPU file.",
      "topics": [
        "read_spu"
      ]
    },
    {
      "page": "read_total_pop",
      "title": "Extract population data from PJNZ file",
      "topics": [
        "read_total_pop"
      ]
    }
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      "source": "pjnz.Rmd",
      "filename": "pjnz.html",
      "title": "PJNZ Files",
      "author": "Robert Ashton",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Files accessed by specio",
        ".DP",
        ".xml",
        ".SPT - EPP results for Spectrum",
        "Section 1: National results",
        "Section 2: National F/M ratios and IDU info",
        "Section 3: Total workset results",
        "Section 4: Workset F/M ratios and IDU info",
        "Section 5: First sub-population results",
        "Section 6: First sub-population F/M ratios and IDU info",
        "General notes",
        ".SPU - EPP uncertainty results for Spectrum",
        "Files not currently accessed by specio",
        "ep1 - year and demographic inputs that EPP needs from Spectrum",
        "typ - type of the EPP workset either GENERALIZED or CONCENTRATED",
        "ep4 - ART data and parameters"
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      "created": "2019-03-22 14:53:15",
      "modified": "2019-03-22 14:53:15",
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