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  "Title": "Vaccine Impact Calculation",
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      "title": "Calculate impact - requires a DB connection to montagu.",
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        "calculate_impact"
      ]
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      "title": "Determine touchstone",
      "topics": [
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      "title": "Determine touchstone id",
      "topics": [
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    },
    {
      "page": "impact_by_birth_year",
      "title": "Calculate impact by birth year (lifetime impact)",
      "topics": [
        "impact_by_birth_year"
      ]
    },
    {
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      "title": "Calculate impact by calendar year",
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        "impact_by_year_of_vaccination_cohort_perspective"
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