Package: epireview
Title: Tools to update and summarise the latest pathogen data from the
        Pathogen Epidemiology Review Group (PERG)
Version: 1.4.8
Authors@R: c(
    person("Rebecca", "Nash", email = "r.nash@imperial.ac.uk", role = "aut",
           comment = c(ORCID = "0000-0002-5213-4364")),
    person("Christian", "Morgenstern", email = "c.morgenstern@imperial.ac.uk", role = "aut",
           comment = c(ORCID = "0000-0003-3735-1130")),
    person("Cosmo", "Santoni", email = "cosmo.santoni@imperial.ac.uk", role = "aut"),
    person("Sangeeta", "Bhatia", email = "s.bhatia@imperial.ac.uk", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-6525-101X")),
    person("Richard", "Sheppard", email = "richard.sheppard11@imperial.ac.uk", role = "aut"),
    person("Joseph", "Hicks", email = "j.hicks@imperial.ac.uk", role = "aut"),
    person("Gina", "Cuomo-Dannenburg", role = "aut", comment = c(ORCID = "0000-0001-6821-0352")),
    person("Ruth", "McCabe", role = "aut", comment = c(ORCID = "0000-0002-6368-9103")),
    person("Kelly", "McCain", role = "aut", comment = c(ORCID = "0000-0003-2393-2217")),
    person("Joshua", "Lambert", role = "aut", comment = c(ORCID = "0000-0001-5218-3046")),
    person("Anne", "Cori", role = "aut", comment = c(ORCID = "0000-0002-8443-9162")),
    person("Thomas", "Rawson", role = "aut", comment = c(ORCID = "0000-0001-8182-4279")),
    person("Patrick", "Doohan", role = "aut", comment = c(ORCID = "0000-0001-8076-1106")),
    person("Tristan", "Naidoo", role = "aut", comment = c(ORCID = "0000-0001-9970-2421")),
    person("Shazia", "Ruybal-Pesántez", role = "aut", comment = c(ORCID = "0000-0002-0495-179X")),
    person("Anna", "Vicco", role = "aut", comment = c(ORCID = "0000-0002-6555-3090")))
Description: Contains the latest open access pathogen data from the
        Pathogen Epidemiology Review Group (PERG). Tools are available
        to update pathogen databases with new peer-reviewed data as it
        becomes available, and to summarise the latest data using
        tables and figures.
License: MIT + file LICENSE
Depends: epitrix, ggplot2, ggforce, R (>= 4.1.0)
Imports: dplyr, readr, scales, cli, vroom
Suggests: DT, knitr, lifecycle, tidyverse, testthat (>= 3.0.0),
        rmarkdown
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/Needs/website: DT, tidyverse, ggplot2
URL: https://mrc-ide.github.io/epireview/
BugReports: https://github.com/mrc-ide/epireview/issues
Config/pak/sysreqs: libfontconfig1-dev libfreetype6-dev libicu-dev
        libsodium-dev libx11-dev
Repository: https://mrc-ide.r-universe.dev
Date/Publication: 2026-05-29 12:16:52 UTC
RemoteUrl: https://github.com/mrc-ide/epireview
RemoteRef: main
RemoteSha: 612e8d82ee73a28d31c615dd5fed496570d36bd8
NeedsCompilation: no
Packaged: 2026-05-29 12:53:50 UTC; root
Author: Rebecca Nash [aut] (ORCID: <https://orcid.org/0000-0002-5213-4364>),
  Christian Morgenstern [aut] (ORCID:
    <https://orcid.org/0000-0003-3735-1130>),
  Cosmo Santoni [aut],
  Sangeeta Bhatia [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-6525-101X>),
  Richard Sheppard [aut],
  Joseph Hicks [aut],
  Gina Cuomo-Dannenburg [aut] (ORCID:
    <https://orcid.org/0000-0001-6821-0352>),
  Ruth McCabe [aut] (ORCID: <https://orcid.org/0000-0002-6368-9103>),
  Kelly McCain [aut] (ORCID: <https://orcid.org/0000-0003-2393-2217>),
  Joshua Lambert [aut] (ORCID: <https://orcid.org/0000-0001-5218-3046>),
  Anne Cori [aut] (ORCID: <https://orcid.org/0000-0002-8443-9162>),
  Thomas Rawson [aut] (ORCID: <https://orcid.org/0000-0001-8182-4279>),
  Patrick Doohan [aut] (ORCID: <https://orcid.org/0000-0001-8076-1106>),
  Tristan Naidoo [aut] (ORCID: <https://orcid.org/0000-0001-9970-2421>),
  Shazia Ruybal-Pesántez [aut] (ORCID:
    <https://orcid.org/0000-0002-0495-179X>),
  Anna Vicco [aut] (ORCID: <https://orcid.org/0000-0002-6555-3090>)
Maintainer: Sangeeta Bhatia <s.bhatia@imperial.ac.uk>