NEWS

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epireview 1.4.8

Minor corrections to parameters for Ebola BVD strain

epireview 1.4.7

Added two additional parameters for Ebola BVD strain

epireview 1.4.6

• Added Nipah data

epireview 1.4.5

• Added Zika data sets

epireview 1.4.4

• Updated dataset for SARS-CoV-1

epireview 1.4.3

• BUG FIX: Corrected author first/last name in lassa data

epireview 1.4.2

• Code tidy-up and reduce dependancies

epireview 1.4.1

• Consistent handling of how files are read in to provide a smoother user experience.

epireview 1.4.0

• MAJOR RELEASE
  • Bug fixes
  • SARS-CoV-1 data release
  • Minor fixes to Ebola data

epireview 1.3.6

• FEATURE: The default color palette is updated with a new one from ggsci and introduces a custom_palette() function to support multi-country label visualization.

• BUG FIX: Functionality to supply custom colour palette now works as expected.

epireview 1.3.5

• BUG-FIX: Fixes #117. NA rows were being created because filter_df_for_metamean used == to compare strings, leading to NAs being created when the RHS was NA. Comparison now is being done using %in%.

epireview 1.3.4

• DATA: Adds SARS-CoV-1 data (articles, models, and parameters). Outbreaks were not extracted.

epireview 1.3.3

• FEATURE: The argument to load_epidata is made case-insensitive. Addresses #96

epireview 1.3.2

• BUG-FIX: Fixes #86 by removing a duplicated row. Also fixes an incorrectly entered method type for CFR, and incorrectly extracted population sizes.

epireview 1.3.1

• BUG-FIX: Fixes #104 using readr::read_delim to read in parameter type short names

epireview 1.3.0

• FEATURE
  • Updated lassa data available following updated literature search

• MAJOR RELEASE
  • Improved messages when loading data via load_epidata
  • User-friendly getters for key epi parameters
  • Bug fixes

epireview 1.2.13

• FEATURE: new function to format parameter dataset so that it can be input into meta-analysis of proportions.

epireview 1.2.12

• FEATURE: Addresses #98 by including article_info as key column returned when parameter specific getters are invoked.

epireview 1.2.11

• FEATURE: Adds a R-user friendly parameter name to the params table loaded via load_epidata. This also makes parameter names consistent across pathogens. Addresses #59.

epireview 1.2.10

• FEATURE: Moves error logging cli package and improves warnings addressing #57 and #21

epireview 1.2.9

• FEATURE: functions to get specific parameters for a given pathogen.

epireview 1.2.8

• BUG FIX: Fixes #73 which caused rows of the params dataset to be dropped during if reordering the population
  country was NA.
• FEATURE: reorder_studies can now reorder by any column in the params dataset

epireview 1.2.7

• FEATURE: filter_df_for_metamean now includes rows with uncertainty types introduced specifically for SARS.

epireview 1.2.6

• FEATURE: Added custom axis-label functionality to forest_plot()
• BUG FIX: Fixed a bug whereby single uncertainty names would be used for paired uncertainty values.

epireview 1.2.5

• FEATURE: addresses #80 by including doi in article columns merged with other key dfs.

epireview 1.2.4

• BUG FIX: Updated outbreak and parameter column types. Fixes warnings being issued when lassa or ebola data were loaded.

epireview 1.2.3

• BUG-FIX: Fixes Issue #56 where some article labels were NA because of an article being associated with multiple ids.

epireview 1.2.2

• BUG-FIX: Fixes #71; file names are changed to match function names for consistency.

epireview 1.2.1

• FEATURE: New function to assign QA score to articles in a simple and consistent manner.

epireview 1.2.0

• Major release adding new features from versions 1.1.1, 1.1.2, and 1.13.

epireview 1.1.3

• FEATURE: Add a function to extract parameters.

epireview 1.1.2

• FEATURE: Add a function to create pretty article labels

epireview 1.1.1

• FEATURE: Add filter_df_for_metamean function