NEWS

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mpoxseir 0.2.16

• Switched likelihood for cases by age to beta-binomial

mpoxseir 0.2.13

• Add likelihood term for % cases by age

mpoxseir 0.2.12

• Add Bujumbura region

mpoxseir 0.2.9

• children_ind_raw replaced with is_child, adults_ind_raw replaced with (1 - is_child)
• vaccination allocation determined based on 3 criteria of eligibility, prioritisation and target met

mpoxseir 0.2.8

• Age groups are now 0-4, 5-11, 12-14, 15-19, then in 5yr bands to allow for new guidance on vaccines for +/-12yo
• Add optional synthetic contact matrices from Prem et al. 2021

mpoxseir 0.2.7

• beta_hcw scaled by total population size

mpoxseir 0.2.6

• Those aged 12 and above are considered adults (relevant to 12 - 17 & CSWs)

mpoxseir 0.2.5

• Fixed lag issue affecting some states

mpoxseir 0.2.4

• Increase population of SWs in Sud Kivu

mpoxseir 0.2.3

• Export cases by transmission route

mpoxseir 0.2.2

• Added fitting to cumulative CFR by age group

mpoxseir 0.2.1

• Export cases and deaths in key populations and vaccine doses by age group / key pop

mpoxseir 0.2.0

• Package ported from odin-dust-mcstate to odin2-dust2-monty

mpoxseir 0.1.11

• Parametrised HCWs
• Added fitting to % cases in HCW / SW
• Fixed output bug in cases among SW

mpoxseir 0.1.10

• Added Negative-Binomial likelihood option

mpoxseir 0.1.7

• Redefined mpoxseir date so that "2023-01-01" corresponds to mpoxseir date 0

mpoxseir 0.1.6

• Add mpoxseir_date functions

mpoxseir 0.1.4

• Split SW into CSW and ASW, added HCW

mpoxseir 0.0.1

• Basic age-structured SEIR in odin.dust, adapted from squire