NEWS
mpoxseir 0.2.16
- Switched likelihood for cases by age to beta-binomial
mpoxseir 0.2.13
- Add likelihood term for % cases by age
mpoxseir 0.2.12
mpoxseir 0.2.9
- children_ind_raw replaced with is_child, adults_ind_raw replaced with (1 - is_child)
- vaccination allocation determined based on 3 criteria of eligibility, prioritisation and target met
mpoxseir 0.2.8
- Age groups are now 0-4, 5-11, 12-14, 15-19, then in 5yr bands to allow for new guidance on vaccines for +/-12yo
- Add optional synthetic contact matrices from Prem et al. 2021
mpoxseir 0.2.7
beta_hcw scaled by total population size
mpoxseir 0.2.6
- Those aged 12 and above are considered adults (relevant to 12 - 17 & CSWs)
mpoxseir 0.2.5
- Fixed lag issue affecting some states
mpoxseir 0.2.4
- Increase population of SWs in Sud Kivu
mpoxseir 0.2.3
- Export cases by transmission route
mpoxseir 0.2.2
- Added fitting to cumulative CFR by age group
mpoxseir 0.2.1
- Export cases and deaths in key populations and vaccine doses by age group / key pop
mpoxseir 0.2.0
- Package ported from odin-dust-mcstate to odin2-dust2-monty
mpoxseir 0.1.11
- Parametrised HCWs
- Added fitting to % cases in HCW / SW
- Fixed output bug in cases among SW
mpoxseir 0.1.10
- Added Negative-Binomial likelihood option
mpoxseir 0.1.7
- Redefined mpoxseir date so that "2023-01-01" corresponds to mpoxseir date 0
mpoxseir 0.1.6
- Add mpoxseir_date functions
mpoxseir 0.1.4
- Split SW into CSW and ASW, added HCW
mpoxseir 0.0.1
- Basic age-structured SEIR in odin.dust, adapted from squire