Package 'naomi.options'

Title: Contains model and calibration options and helper functions for Naomi
Description: Contains model and calibration option JSON and default values and helper functions for Naomi.
Authors: Robert Ashton [aut, cre]
Maintainer: Robert Ashton <[email protected]>
License: MIT + file LICENSE
Version: 1.2.1
Built: 2024-10-31 05:36:08 UTC
Source: https://github.com/mrc-ide/naomi.options

Help Index


Map calibration option ID to JSON calibration option labels

Description

Map calibration option ID to JSON calibration option labels

Usage

get_calibration_option_labels(options)

Arguments

options

Key-value (calibration option name - calibration option ID) list of model options to be mapped.

Value

Mapped key-value (calibration option name - calibration option label) list of model options


Get the options JSON

Description

This gets the JSON for the model or calibration options for a particular country. The control info will be filled in in this order of precedence

  1. override_values arg (if set)

  2. hardcoded default values from default_options.csv

Usage

get_controls_json(type, iso3, options, override_values, config = list())

Arguments

type

The type of options to get, model or calibration

iso3

The iso3 of the country to get options for

options

A named list of options to override those in JSON template. Must be in the format of a list of control options i.e. list( control_id = list( list( id = "1", label = "one" ), list( id = "2", label = "two" ) ), ... )

override_values

A list of named values to use as default values. This will take precedent over a hardcoded value if both are set.

config

Additional configuration options for returned JSON. If type is 'model' can set boolean 'include_art' and 'include_anc' to include options for ART and ANC controls. You can also pass additional_control_groups which will be appended to the top of the controls JSON. additional_control_groups must be a list representing a valid control group object. No affect for 'calibration' type.

Value

The complete controls JSON


Take a vector of labels and translate

Description

Take a vector of labels and translate

Usage

translate_labels(labels, lang = traduire::translator()$language())

Arguments

labels

Vector of labels, the translation keys

lang

Language to return output in

Value

Translated labels for current language