Package: ascertainr 0.0.0.9000
Sangeeta Bhatia
ascertainr: Case Ascertainment Model
This pacakge implements a case asecertainment model.
Authors:
ascertainr_0.0.0.9000.tar.gz
ascertainr_0.0.0.9000.zip(r-4.5)ascertainr_0.0.0.9000.zip(r-4.4)ascertainr_0.0.0.9000.zip(r-4.3)
ascertainr_0.0.0.9000.tgz(r-4.4-any)ascertainr_0.0.0.9000.tgz(r-4.3-any)
ascertainr_0.0.0.9000.tar.gz(r-4.5-noble)ascertainr_0.0.0.9000.tar.gz(r-4.4-noble)
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ascertainr.pdf |ascertainr.html✨
ascertainr/json (API)
# Install 'ascertainr' in R: |
install.packages('ascertainr', repos = c('https://mrc-ide.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mrc-ide/ascertainr/issues
Last updated 5 years agofrom:5f958be372 (on master). Checks:OK: 1 WARNING: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 13 2024 |
R-4.5-win | WARNING | Nov 13 2024 |
R-4.5-linux | WARNING | Nov 13 2024 |
R-4.4-win | WARNING | Nov 13 2024 |
R-4.4-mac | WARNING | Nov 13 2024 |
R-4.3-win | WARNING | Nov 13 2024 |
R-4.3-mac | WARNING | Nov 13 2024 |
Exports:ascertainmentaugment_casesepisize_after_muepisize_before_muproject_deathsratio_deaths_casesweighted_incid
Dependencies:clicpp11distcretedplyrepitrixfansigenericsgluelifecyclemagrittrpillarpkgconfigpurrrR6rlangsodiumstringistringrtibbletidyrtidyselectutf8vctrswithr
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Estimate case ascertainment ratio | ascertainment |
Augment the time series of cases | augment_cases |
Estimate epidemic size from the present time minus the mean delay between case and death up to present | episize_after_mu |
Estimate size of the epidemic upto the present time minus the mean delay from case to death. | episize_before_mu |
Project the number of deaths | project_deaths |
Estimate ratio if deaths to reported cases | ratio_deaths_cases |
Return the incidence time-series weighted by the reporting to death delay | weighted_incid |