Package: ascertainr 0.0.0.9000

Sangeeta Bhatia
ascertainr: Case Ascertainment Model
This pacakge implements a case asecertainment model.
Authors:
ascertainr_0.0.0.9000.tar.gz
ascertainr_0.0.0.9000.zip(r-4.7)ascertainr_0.0.0.9000.zip(r-4.6)ascertainr_0.0.0.9000.zip(r-4.5)
ascertainr_0.0.0.9000.tgz(r-4.6-any)ascertainr_0.0.0.9000.tgz(r-4.5-any)
ascertainr_0.0.0.9000.tar.gz(r-4.7-any)ascertainr_0.0.0.9000.tar.gz(r-4.6-any)
ascertainr_0.0.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ascertainr/json (API)
| # Install 'ascertainr' in R: |
| install.packages('ascertainr', repos = c('https://mrc-ide.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mrc-ide/ascertainr/issues
Last updated from:5f958be372 (on master). Checks:7 WARNING, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | WARNING | 112 | ||
| source / vignettes | OK | 169 | ||
| linux-release-x86_64 | WARNING | 116 | ||
| macos-release-arm64 | WARNING | 108 | ||
| macos-oldrel-arm64 | WARNING | 67 | ||
| windows-devel | WARNING | 69 | ||
| windows-release | WARNING | 78 | ||
| windows-oldrel | WARNING | 63 | ||
| wasm-release | OK | 113 |
Exports:ascertainmentaugment_casesepisize_after_muepisize_before_muproject_deathsratio_deaths_casesweighted_incid
Dependencies:clicpp11distcretedplyrepitrixgenericsgluelifecyclemagrittrpillarpkgconfigpurrrR6rlangsodiumstringistringrtibbletidyrtidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Estimate case ascertainment ratio | ascertainment |
| Augment the time series of cases | augment_cases |
| Estimate epidemic size from the present time minus the mean delay between case and death up to present | episize_after_mu |
| Estimate size of the epidemic upto the present time minus the mean delay from case to death. | episize_before_mu |
| Project the number of deaths | project_deaths |
| Estimate ratio if deaths to reported cases | ratio_deaths_cases |
| Return the incidence time-series weighted by the reporting to death delay | weighted_incid |