Package: dfertility 0.1.666
Oli Stevens
dfertility: District level estimation of age-specific fertility
This package estimates district-level estimates of age-specific fertility from nationally representative household survey data.
Authors:
dfertility_0.1.666.tar.gz
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dfertility.pdf |dfertility.html✨
dfertility/json (API)
| # Install 'dfertility' in R: |
| install.packages('dfertility', repos = c('https://mrc-ide.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mrc-ide/dfertility/issues
Last updated 10 months agofrom:e3b480d0fd (on master). Checks:OK: 1 WARNING: 8. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 14 2024 |
| R-4.5-win-x86_64 | WARNING | Oct 14 2024 |
| R-4.5-linux-x86_64 | WARNING | Oct 14 2024 |
| R-4.4-win-x86_64 | WARNING | Oct 14 2024 |
| R-4.4-mac-x86_64 | WARNING | Oct 14 2024 |
| R-4.4-mac-aarch64 | WARNING | Oct 14 2024 |
| R-4.3-win-x86_64 | WARNING | Oct 14 2024 |
| R-4.3-mac-x86_64 | WARNING | Oct 14 2024 |
| R-4.3-mac-aarch64 | WARNING | Oct 14 2024 |
Exports:area_populationsassign_cluster_areaassign_tipscalculate_dhs_fertilitycalculate_mics_fertilityconvert_age_groupscreate_surveys_micsextend_populationsextract_model_levelfilter_micsfit_sample_tmbget_areasget_boundariesget_fertility_surveysget_input_filesget_populationsir_by_areajoin_survey_areasmake_adjacency_matrixmake_asfr_inputsmake_model_frames_devmake_rw_structure_matrixmake_tmb_inputsmake_tmb_objmap_ir_to_areasrmvnorm_sparseprecsample_tmbsdreport_joint_precisionsolveSubsettmb_outputstransform_micsupdateCholeskyvalidate_model_frame
Dependencies:askpassbitbit64bootbrioclassclassIntclicliprcolorspacecountrycodecpp11crayoncurlDBIdeldirdigestdplyre1071fansifarverforcatsforeigngenericsgetPassggplot2gluegtablehavenherehmshttriotoolsisobandjsonliteKernSmoothlabelinglatticelifecyclemagrittrMASSMatrixmgcvmimemunsellmvtnormnlmeopensslpillarpkgconfigprettyunitsprogressproxypurrrqdapRegexR6rappdirsRColorBrewerRcppRcppEigenrdhsreadrrlangrprojrootrstudioapis2scalessfspspDataspdepstorrstringistringrsystibbletidyrtidyselectTMBtzdbunitsutf8vctrsviridisLitevroomwithrwkxml2zipzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Aggregate district level populations | area_populations |
| Aggregate district level cluster dataframe | assign_cluster_area |
| Calculate fertility rates from DHS, MIS, AIS data | calculate_dhs_fertility |
| Calculate fertility rates from MICS data | calculate_mics_fertility |
| Download MICS surveys | create_surveys_mics |
| Filter MICS datasets | filter_mics |
| Fit TMB model | fit_sample_tmb |
| Make area dataframes | get_areas |
| Get populations | get_boundaries |
| Extract area, population, boundary files from target directory | get_input_files |
| Get populations | get_populations |
| Join individual recode survey datasets by area | ir_by_area |
| Join household datasets with area hierarchy | join_survey_areas |
| Neighbor list | make_adjacency_matrix |
| Transform survey datasets into inputs for calc_asfr | make_asfr_inputs |
| Make model frames for batch running | make_model_frames_batch |
| Make model frames | make_model_frames_dev |
| Make random walk structure matrices | make_rw_structure_matrix |
| Sample TMB | sample_tmb |
| Transform MICS dataframes | transform_mics |