Package: drjacoby 1.5.4

Bob Verity

drjacoby: Flexible Markov Chain Monte Carlo via Reparameterization

drjacoby is an R package for performing Bayesian inference via Markov chain monte carlo (MCMC). In addition to being highly flexible it implements some advanced techniques that can improve mixing in tricky situations.

Authors:Bob Verity [aut, cre], Pete Winskill [aut]

drjacoby_1.5.4.tar.gz
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drjacoby.pdf |drjacoby.html✨
drjacoby/json (API)

# Install 'drjacoby' in R:
install.packages('drjacoby', repos = c('https://mrc-ide.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/mrc-ide/drjacoby/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

6.26 score 12 stars 76 scripts 14 exports 69 dependencies

Last updated 6 months agofrom:edfea6339e (on master). Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 23 2024
R-4.5-win-x86_64OKNov 23 2024
R-4.5-linux-x86_64OKNov 23 2024
R-4.4-win-x86_64OKNov 23 2024
R-4.4-mac-x86_64OKNov 23 2024
R-4.4-mac-aarch64OKNov 23 2024
R-4.3-win-x86_64OKNov 23 2024
R-4.3-mac-x86_64OKNov 23 2024
R-4.3-mac-aarch64OKNov 23 2024

Exports:check_drjacoby_loadedcpp_templatedefine_paramsplot_autocorrelationplot_cor_matplot_credibleplot_densityplot_mc_acceptanceplot_pairsplot_rung_loglikeplot_scatterplot_tracerun_mcmcsample_chains

Dependencies:askpassclicliprcodacolorspacecowplotcpp11crayoncredentialscurldescdplyrfansifarverforcatsfsgenericsgertGGallyggplot2ggstatsghgitcredsgluegtablehmshttr2iniisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmeopensslpatchworkpillarpkgconfigplyrprettyunitsprogresspurrrR6rappdirsRColorBrewerRcpprlangrprojrootrstudioapiscalesstringistringrsystibbletidyrtidyselectusethisutf8vctrsviridisLitewhiskerwithryamlzip

Basic Example

Bob Verity and Pete Winskill

Rendered fromexample.Rmdusingknitr::rmarkdownon Nov 23 2024.

Last update: 2024-06-26
Started: 2019-05-03

Double well

Bob Verity and Pete Winskill

Rendered fromchecks_double_well.Rmdusingknitr::rmarkdownon Nov 23 2024.

Last update: 2024-06-26
Started: 2021-09-08

Getting Model Fits

Bob Verity and Pete Winskill

Rendered fromgetting_model_fits.Rmdusingknitr::rmarkdownon Nov 23 2024.

Last update: 2024-06-26
Started: 2022-02-10

Installing drjacoby

Bob Verity and Pete Winskill

Rendered frominstallation.Rmdusingknitr::rmarkdownon Nov 23 2024.

Last update: 2024-06-26
Started: 2019-05-02

Multilevel example with blocks

Bob Verity and Pete Winskill

Rendered fromchecks_multilevel_blocks.Rmdusingknitr::rmarkdownon Nov 23 2024.

Last update: 2021-09-08
Started: 2021-09-08

Normal model

Bob Verity and Pete Winskill

Rendered fromchecks_normal_model.Rmdusingknitr::rmarkdownon Nov 23 2024.

Last update: 2021-09-08
Started: 2021-09-08

Parallel Tempering

Bob Verity and Pete Winskill

Rendered frommetropolis_coupling.Rmdusingknitr::rmarkdownon Nov 23 2024.

Last update: 2024-06-26
Started: 2019-05-22

Return prior

Bob Verity and Pete Winskill

Rendered fromchecks_return_prior.Rmdusingknitr::rmarkdownon Nov 23 2024.

Last update: 2021-09-08
Started: 2021-09-08

Running in Parallel

Bob Verity and Pete Winskill

Rendered fromparallel.Rmdusingknitr::rmarkdownon Nov 23 2024.

Last update: 2024-06-26
Started: 2019-05-22

Using Likelihood Blocks

Bob Verity and Pete Winskill

Rendered fromblocks.Rmdusingknitr::rmarkdownon Nov 23 2024.

Last update: 2022-02-10
Started: 2021-01-08