Package: drjacoby 1.5.4

Bob Verity

drjacoby: Flexible Markov Chain Monte Carlo via Reparameterization

drjacoby is an R package for performing Bayesian inference via Markov chain monte carlo (MCMC). In addition to being highly flexible it implements some advanced techniques that can improve mixing in tricky situations.

Authors:Bob Verity [aut, cre], Pete Winskill [aut]

drjacoby_1.5.4.tar.gz
drjacoby_1.5.4.zip(r-4.5)drjacoby_1.5.4.zip(r-4.4)drjacoby_1.5.4.zip(r-4.3)
drjacoby_1.5.4.tgz(r-4.4-arm64)drjacoby_1.5.4.tgz(r-4.4-x86_64)drjacoby_1.5.4.tgz(r-4.3-arm64)drjacoby_1.5.4.tgz(r-4.3-x86_64)
drjacoby_1.5.4.tar.gz(r-4.5-noble)drjacoby_1.5.4.tar.gz(r-4.4-noble)
drjacoby_1.5.4.tgz(r-4.4-emscripten)drjacoby_1.5.4.tgz(r-4.3-emscripten)
drjacoby.pdf |drjacoby.html
drjacoby/json (API)

# Install 'drjacoby' in R:
install.packages('drjacoby', repos = c('https://mrc-ide.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/mrc-ide/drjacoby/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

14 exports 12 stars 1.51 score 79 dependencies

Last updated 13 days agofrom:edfea6339e (on master)

Exports:check_drjacoby_loadedcpp_templatedefine_paramsplot_autocorrelationplot_cor_matplot_credibleplot_densityplot_mc_acceptanceplot_pairsplot_rung_loglikeplot_scatterplot_tracerun_mcmcsample_chains

Dependencies:askpassbackportsbitbit64broombroom.helpersclicliprcodacolorspacecowplotcpp11crayoncredentialscurldescdplyrfansifarverforcatsfsgenericsgertGGallyggplot2ggstatsghgitcredsgluegtablehavenhmshttr2iniisobandjsonlitelabelinglabelledlatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmeopensslpatchworkpillarpkgconfigplyrprettyunitsprogresspurrrR6rappdirsRColorBrewerRcppreadrrlangrprojrootrstudioapiscalesstringistringrsystibbletidyrtidyselecttzdbusethisutf8vctrsviridisLitevroomwhiskerwithryamlzip

Basic Example

Rendered fromexample.Rmdusingknitr::rmarkdownon Jun 26 2024.

Last update: 2024-06-26
Started: 2019-05-03

Double well

Rendered fromchecks_double_well.Rmdusingknitr::rmarkdownon Jun 26 2024.

Last update: 2024-06-26
Started: 2021-09-08

Getting Model Fits

Rendered fromgetting_model_fits.Rmdusingknitr::rmarkdownon Jun 26 2024.

Last update: 2024-06-26
Started: 2022-02-10

Installing drjacoby

Rendered frominstallation.Rmdusingknitr::rmarkdownon Jun 26 2024.

Last update: 2024-06-26
Started: 2019-05-02

Multilevel example with blocks

Rendered fromchecks_multilevel_blocks.Rmdusingknitr::rmarkdownon Jun 26 2024.

Last update: 2021-09-08
Started: 2021-09-08

Normal model

Rendered fromchecks_normal_model.Rmdusingknitr::rmarkdownon Jun 26 2024.

Last update: 2021-09-08
Started: 2021-09-08

Parallel Tempering

Rendered frommetropolis_coupling.Rmdusingknitr::rmarkdownon Jun 26 2024.

Last update: 2024-06-26
Started: 2019-05-22

Return prior

Rendered fromchecks_return_prior.Rmdusingknitr::rmarkdownon Jun 26 2024.

Last update: 2021-09-08
Started: 2021-09-08

Running in Parallel

Rendered fromparallel.Rmdusingknitr::rmarkdownon Jun 26 2024.

Last update: 2024-06-26
Started: 2019-05-22

Using Likelihood Blocks

Rendered fromblocks.Rmdusingknitr::rmarkdownon Jun 26 2024.

Last update: 2022-02-10
Started: 2021-01-08