Package: naomi 2.10.6
naomi: Naomi Model for Subnational HIV Estimates
This package implements the Naomi model for subnational HIV estimates.
Authors:
naomi_2.10.6.tar.gz
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naomi.pdf |naomi.html✨
naomi/json (API)
NEWS
# Install 'naomi' in R: |
install.packages('naomi', repos = c('https://mrc-ide.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mrc-ide/naomi/issues
- demo_anc_testing - Programme data: Malawi routine HIV service delivery data
- demo_area_boundaries - Malawi area boundaries.
- demo_area_hierarchy - Malawi area hierarchy
- demo_area_levels - Malawi area levels.
- demo_art_number - Programme data: Malawi routine HIV service delivery data
- demo_population_agesex - Malawi age-sex stratified population data
- demo_survey_biomarker - Malawi survye biomarkers
- demo_survey_clusters - Malawi survey clusters
- demo_survey_hiv_indicators - Malawi HIV indicators
- demo_survey_individuals - Malawi survey individuals
- demo_survey_meta - Malawi survey metadata
- demo_survey_regions - Malawi survey regions
Last updated 7 hours agofrom:f665276578 (on master). Checks:OK: 1 WARNING: 8. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 20 2024 |
R-4.5-win-x86_64 | WARNING | Dec 20 2024 |
R-4.5-linux-x86_64 | WARNING | Dec 20 2024 |
R-4.4-win-x86_64 | WARNING | Dec 20 2024 |
R-4.4-mac-x86_64 | WARNING | Dec 20 2024 |
R-4.4-mac-aarch64 | WARNING | Dec 20 2024 |
R-4.3-win-x86_64 | WARNING | Dec 20 2024 |
R-4.3-mac-x86_64 | WARNING | Dec 20 2024 |
R-4.3-mac-aarch64 | WARNING | Dec 20 2024 |
Exports:%>%add_output_labelsage_bar_plotlyaggregate_ancaggregate_artalign_inputs_outputsanc_testing_artcov_mfanc_testing_clients_mfanc_testing_prev_mfartnum_mfbar_plotlybuild_hierarchy_labelcalculate_prevalence_art_coveragecalendar_quarter_labelscalendar_quarter_labels_shortcalendar_quarter_to_quartercalendar_quarter_to_quarter_idcalendar_quarter_to_yearcalibrate_outputscmc_dateconvert_calendar_quarterconvert_quarter_idcreate_adj_matrixcreate_area_aggregationcreate_areascreate_edge_listcut_naomi_age_groupdata_type_labelsdisaggregate_0to4_outputsdistrict_barplotextract_pjnz_naomiextract_pjnz_program_dataextract_shiny90_age_sexfit_tmbget_age_groupsget_anc_metadataget_area_collectionget_art_metadataget_five_year_age_groupsget_meta_indicatorget_metadataget_plot_type_column_metadataget_plotting_metadatahintr_calibratehintr_calibrate_plothintr_comparison_plothintr_prepare_agyw_downloadhintr_prepare_coarse_age_group_downloadhintr_prepare_comparison_report_downloadhintr_prepare_datapack_downloadhintr_prepare_spectrum_downloadhintr_prepare_summary_report_downloadhintr_run_modelhintr_validate_anc_programme_datahintr_validate_art_programme_datainterpolate_population_agesexlog_linear_interpmap_outputsnaomi_model_framenaomi_objective_function_rnaomi_output_frameoutput_packagepop_pyramid_outputsprepare_input_time_series_ancprepare_input_time_series_artprepare_spectrum_naomi_comparisonprepare_tmb_inputsquarter_id_to_calendar_quarterquarter_labelsquarter_numberquarter_year_labelsread_anc_testingread_area_mergedread_art_numberread_hintr_outputread_output_packageread_populationread_spectrum_projection_nameread_spectrum_region_coderead_spectrum_region_nameread_survey_indicatorsreport_tmbsample_tmbsave_outputsave_output_packagescale_gmrf_precisionscatter_plotlyselect_naomi_dataspread_areassubset_output_packagesurvey_mfth_mapvalidate_model_optionswrite_datapack_csvwrite_navigator_checklistyear_labels
Dependencies:abindanclikaskpassassertthatbase64encBHbigDbinombitbit64bitopsbootbriobslibcachemcellrangerclassclassIntclicliprcolorspacecommonmarkcpp11crayoncrosstalkcurldata.tabledata.treeDBIdeldirdigestdplyre1071eppeppasmevaluatefansifarverfastmapfastmatchfirst90fontawesomeforcatsfsgenericsggplot2gluegtgtablehighrhmshtmltoolshtmlwidgetshttrisobandjquerylibjsonlitejuicyjuiceKernSmoothknitrlabelinglaterlatticelazyevallifecyclemagrittrmarkdownMASSMatrixmemoisemgcvmimemunsellmvtnormnaomi.optionsnlmeopensslopenxlsxpillarpkgconfigplotlyplyrprettyunitsprogresspromisesproxypurrrqsR6RApiSerializerappdirsRColorBrewerRcppRcppEigenRcppParallelreactablereactRreadrreadxlrematchreshape2rlangrmarkdowns2sassscalessfspspDataspdepstringfishstringistringrsystibbletidyrtidyselecttinytexTMBtraduiretzdbunitsutf8V8vctrsviridisLitevroomwithrwkwritexlxfunxml2yamlzipzoo