Package: popim 0.0.1
Tini Garske
popim: POPulation IMmunity: Run a Demographic Model of Vaccine Exposure Over Time
Tools for setting up an age-structured population, applying vaccination activities to it, and tracking vaccine-induced immunity through time.
Authors:
popim_0.0.1.tar.gz
popim_0.0.1.zip(r-4.5)popim_0.0.1.zip(r-4.4)popim_0.0.1.zip(r-4.3)
popim_0.0.1.tgz(r-4.4-any)popim_0.0.1.tgz(r-4.3-any)
popim_0.0.1.tar.gz(r-4.5-noble)popim_0.0.1.tar.gz(r-4.4-noble)
popim_0.0.1.tgz(r-4.4-emscripten)popim_0.0.1.tgz(r-4.3-emscripten)
popim.pdf |popim.html✨
popim/json (API)
| # Install 'popim' in R: |
| install.packages('popim', repos = c('https://mrc-ide.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mrc-ide/popim/issues
Last updated 5 months agofrom:86c6cdc061 (on main). Checks:OK: 3 NOTE: 4. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 16 2024 |
| R-4.5-win | NOTE | Dec 16 2024 |
| R-4.5-linux | NOTE | Dec 16 2024 |
| R-4.4-win | NOTE | Dec 16 2024 |
| R-4.4-mac | NOTE | Dec 16 2024 |
| R-4.3-win | OK | Dec 16 2024 |
| R-4.3-mac | OK | Dec 16 2024 |
Exports:apply_vaccas_popim_popas_vacc_activitiescalc_pop_immunitycomplete_vacc_activitiesplot_immunityplot_pop_sizepopim_populationpopim_vacc_activitiesread_popim_popread_vacc_activitiesvacc_from_immunity
Dependencies:clicolorspacecpp11dplyrfansifarvergenericsggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigpurrrR6RColorBrewerrlangscalesstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Apply vaccination activities to a population object | apply_vacc |
| Generate a 'popim_population' object from a dataframe | as_popim_pop |
| Generate a 'popim_vacc_activites' object from a dataframe | as_vacc_activities |
| Aggregate the population immunity over age | calc_pop_immunity |
| Add coverage or doses information to the input 'popim_vacc_activities' object | complete_vacc_activities |
| Plot the immunity or population size of a 'popim_population' object | plotting plot_immunity plot_pop_size |
| Constructor of an object of the 'popim_population' class | popim_population |
| Constructor of an object of the 'popim_vacc_activites' class | popim_vacc_activities |
| Read popim_population data from a .csv file | read_popim_pop |
| Read vaccination activities from a .csv file | read_vacc_activities |
| Infer vaccination activities from population | vacc_from_immunity |
