Installation | Example 1: A simple population without specified population size | Population setup | Add vaccination activities | Visualisation | Example 2: A population with specified size and age distribution | Summary | Infer vaccination activities from popim_population object
Package: popim 0.0.1
Tini Garske
popim: POPulation IMmunity: Run a Demographic Model of Vaccine Exposure Over Time
Tools for setting up an age-structured population, applying vaccination activities to it, and tracking vaccine-induced immunity through time.
Authors:
popim_0.0.1.tar.gz
popim_0.0.1.zip(r-4.7)popim_0.0.1.zip(r-4.6)popim_0.0.1.zip(r-4.5)
popim_0.0.1.tgz(r-4.6-any)popim_0.0.1.tgz(r-4.5-any)
popim_0.0.1.tar.gz(r-4.7-any)popim_0.0.1.tar.gz(r-4.6-any)
popim_0.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
popim/json (API)
| # Install 'popim' in R: |
| install.packages('popim', repos = c('https://mrc-ide.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mrc-ide/popim/issues
Datasets:
- unwpp_countries - List of countries in the UN WPP data 2024
Last updated from:ed935d0c31 (on main). Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 130 | ||
| source / vignettes | OK | 218 | ||
| linux-release-x86_64 | NOTE | 138 | ||
| macos-release-arm64 | NOTE | 73 | ||
| macos-oldrel-arm64 | NOTE | 80 | ||
| windows-devel | NOTE | 82 | ||
| windows-release | NOTE | 109 | ||
| windows-oldrel | NOTE | 86 | ||
| wasm-release | OK | 106 |
Exports:apply_vaccas_popim_popas_vacc_activitiescalc_pop_immunitycomplete_vacc_activitiesplot_immunityplot_pop_sizepopim_populationpopim_vacc_activitiesread_popim_popread_vacc_activitiesvacc_from_immunity
Dependencies:clicpp11dplyrfarvergenericsggplot2gluegtableisobandlabelinglifecyclemagrittrpillarpkgconfigpurrrR6RColorBrewerrlangS7scalesstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr
popim
Last update: 2024-06-11
Started: 2024-03-21
popim technical documentation
Data structures | S3 class popim_population | The dataframe | Class attributes | Create, modify and validate objects of this class | S3 class popim_vacc_activities | Relationship between coverage, doses and target population | Create and validate objects of this class | Primary functionality: applying vaccination activities to a population | The inverse: inferring vaccination activities from a population | Population summary & visualisation | Visualisation | Aggregation over age
Last update: 2024-06-11
Started: 2024-06-11
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Apply vaccination activities to a population object | apply_vacc |
| Generate a 'popim_population' object from a dataframe | as_popim_pop |
| Generate a 'popim_vacc_activites' object from a dataframe | as_vacc_activities |
| Aggregate the population immunity over age | calc_pop_immunity |
| Add coverage or doses information to the input 'popim_vacc_activities' object | complete_vacc_activities |
| Plot the immunity or population size of a 'popim_population' object | plotting plot_immunity plot_pop_size |
| Constructor of an object of the 'popim_population' class | popim_population |
| Constructor of an object of the 'popim_vacc_activites' class | popim_vacc_activities |
| Read popim_population data from a .csv file | read_popim_pop |
| Read vaccination activities from a .csv file | read_vacc_activities |
| List of countries in the UN WPP data 2024 | unwpp_countries |
| Infer vaccination activities from population | vacc_from_immunity |
