Package: dust2 0.1.6
Rich FitzJohn
dust2: Next Generation dust
Experimental sources for the next generation of dust, which will properly adopt the particle filter, have support for partial parameter updates, support for multiple parameter sets and hopefully better GPU/MPI support.
Authors:
dust2_0.1.6.tar.gz
dust2_0.1.6.zip(r-4.5)dust2_0.1.6.zip(r-4.4)dust2_0.1.6.zip(r-4.3)
dust2_0.1.6.tgz(r-4.4-x86_64)dust2_0.1.6.tgz(r-4.4-arm64)dust2_0.1.6.tgz(r-4.3-x86_64)dust2_0.1.6.tgz(r-4.3-arm64)
dust2_0.1.6.tar.gz(r-4.5-noble)dust2_0.1.6.tar.gz(r-4.4-noble)
dust2_0.1.6.tgz(r-4.4-emscripten)dust2_0.1.6.tgz(r-4.3-emscripten)
dust2.pdf |dust2.html✨
dust2/json (API)
| # Install 'dust2' in R: |
| install.packages('dust2', repos = c('https://mrc-ide.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mrc-ide/dust2/issues
Last updated 13 hours agofrom:bd41f11203 (on main). Checks:OK: 7 NOTE: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 17 2024 |
| R-4.5-win-x86_64 | NOTE | Sep 17 2024 |
| R-4.5-linux-x86_64 | NOTE | Sep 17 2024 |
| R-4.4-win-x86_64 | OK | Sep 17 2024 |
| R-4.4-mac-x86_64 | OK | Sep 17 2024 |
| R-4.4-mac-aarch64 | OK | Sep 17 2024 |
| R-4.3-win-x86_64 | OK | Sep 17 2024 |
| R-4.3-mac-x86_64 | OK | Sep 17 2024 |
| R-4.3-mac-aarch64 | OK | Sep 17 2024 |
Exports:dust_compiledust_filter_createdust_filter_datadust_likelihood_last_gradientdust_likelihood_last_historydust_likelihood_last_statedust_likelihood_montydust_likelihood_rng_statedust_likelihood_rundust_likelihood_set_rng_statedust_ode_controldust_packagedust_system_compare_datadust_system_createdust_system_generatordust_system_internalsdust_system_reorderdust_system_rng_statedust_system_run_to_timedust_system_set_rng_statedust_system_set_statedust_system_set_state_initialdust_system_set_timedust_system_simulatedust_system_statedust_system_timedust_system_update_parsdust_unfilter_create
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Compile a dust2 system | dust_compile |
| Create a particle filter | dust_filter_create |
| Prepare data | dust_filter_data |
| Create copy of a dust likelihood object | dust_likelihood_copy |
| Fetch last likelihood gradient | dust_likelihood_last_gradient |
| Fetch last likelihood history | dust_likelihood_last_history |
| Get likelihood state | dust_likelihood_last_state |
| Create monty model | dust_likelihood_monty |
| Get filter RNG state | dust_likelihood_rng_state dust_likelihood_set_rng_state |
| Compute likelihood | dust_likelihood_run |
| Create a dust_ode_control object. | dust_ode_control |
| Create dust system in package | dust_package |
| Compare system state against data | dust_system_compare_data |
| Create a dust system object | dust_system_create |
| Fetch system internals | dust_system_internals |
| Reorder states | dust_system_reorder |
| Fetch and set rng state | dust_system_rng_state dust_system_set_rng_state |
| Run system | dust_system_run_to_time |
| Set system state | dust_system_set_state |
| Set system state to initial conditions | dust_system_set_state_initial |
| Set system time | dust_system_set_time |
| Simulate system | dust_system_simulate |
| Extract system state | dust_system_state |
| Fetch system time | dust_system_time |
| Update parameters | dust_system_update_pars |
| Create an unfilter | dust_unfilter_create |
