Package: hipercow 1.1.8

Rich FitzJohn

hipercow: High Performance Computing

Set up cluster environments and jobs. Moo.

Authors:Rich FitzJohn [aut, cre], Wes Hinsley [aut], Paul Liétar [aut], Imperial College of Science, Technology and Medicine [cph]

hipercow_1.1.8.tar.gz
hipercow_1.1.8.zip(r-4.7)hipercow_1.1.8.zip(r-4.6)hipercow_1.1.8.zip(r-4.5)
hipercow_1.1.8.tgz(r-4.6-any)hipercow_1.1.8.tgz(r-4.5-any)
hipercow_1.1.8.tar.gz(r-4.7-any)hipercow_1.1.8.tar.gz(r-4.6-any)
hipercow_1.1.8.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
hipercow/json (API)

# Install 'hipercow' in R:
install.packages('hipercow', repos = c('https://mrc-ide.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mrc-ide/hipercow/issues

Pkgdown/docs site:https://mrc-ide.github.io

On CRAN:

Conda:

5.83 score 1 stars 1 packages 58 scripts 63 exports 23 dependencies

Last updated from:b7dd52258a (on main). Checks:6 NOTE, 2 OK, 1 ERROR. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE348
source / vignettesOK322
linux-release-x86_64NOTE335
macos-release-arm64NOTE234
macos-oldrel-arm64NOTE454
windows-develNOTE237
windows-releaseERROR298
windows-oldrelNOTE925
wasm-releaseOK106

Exports:dide_authenticatedide_checkdide_delete_keypairdide_generate_keypairdide_pathdide_usernamehipercowhipercow_bundle_cancelhipercow_bundle_createhipercow_bundle_deletehipercow_bundle_listhipercow_bundle_loadhipercow_bundle_log_valuehipercow_bundle_resulthipercow_bundle_retryhipercow_bundle_statushipercow_bundle_waithipercow_cluster_infohipercow_configurationhipercow_configurehipercow_driverhipercow_environment_createhipercow_environment_deletehipercow_environment_existshipercow_environment_listhipercow_environment_showhipercow_envvarshipercow_example_helperhipercow_hellohipercow_inithipercow_parallelhipercow_parallel_get_coreshipercow_parallel_load_environmenthipercow_parallel_set_coreshipercow_provisionhipercow_provision_checkhipercow_provision_comparehipercow_provision_listhipercow_purgehipercow_resourceshipercow_resources_validatehipercow_rrq_controllerhipercow_rrq_stop_workers_once_idlehipercow_rrq_workers_submithipercow_unconfiguretask_canceltask_create_bulk_calltask_create_bulk_exprtask_create_calltask_create_explicittask_create_exprtask_create_scripttask_evaltask_infotask_listtask_log_showtask_log_valuetask_log_watchtask_resulttask_retrytask_statustask_submittask_wait

Dependencies:askpassaudiocallrclicurldescfilelockfsidsjsonlitelpSolveopensslpkgbuildpkgcachepkgdependsprocessxpsR6rlangsysuuidwithrzip

Administration

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Last update: 2025-10-13
Started: 2024-01-04

Details

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Last update: 2025-04-23
Started: 2024-01-04

The DIDE Cluster

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Last update: 2025-04-23
Started: 2025-04-23

Using secrets on the cluster

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Last update: 2025-10-13
Started: 2025-10-13

Environments

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Last update: 2025-04-23
Started: 2024-11-27

hipercow

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Last update: 2025-04-23
Started: 2024-01-04

Migration from didehpc

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Last update: 2025-04-23
Started: 2024-01-12

Packages and provisioning

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Last update: 2025-04-23
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Parallel Tasks

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Last update: 2025-04-23
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Troubleshooting

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Using INLA on Windows

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Last update: 2025-04-23
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Using stan

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Last update: 2025-04-23
Started: 2024-06-12

Workers

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Last update: 2025-04-23
Started: 2024-12-09

Readme and manuals

Help Manual

Help pageTopics
DIDE credentialsdide_authenticate
Check we can use the DIDE clusterdide_check
Generate keypairdide_delete_keypair dide_generate_keypair
Describe a path mappingdide_path
Report DIDE usernamedide_username
Cancel bundle taskshipercow_bundle_cancel
Create task bundlehipercow_bundle_create
Delete task bundleshipercow_bundle_delete
List existing bundleshipercow_bundle_list
Load existing bundlehipercow_bundle_load
Fetch bundle logshipercow_bundle_log_value
Fetch bundle resultshipercow_bundle_result
Retry task bundlehipercow_bundle_retry
Bundle statushipercow_bundle_status
Wait for a bundle to completehipercow_bundle_wait
Describe clusterhipercow_cluster_info
Report on hipercow configurationhipercow_configuration
Configure your hipercow roothipercow_configure
Create a driverhipercow_driver
Manage environmentshipercow_environment_create hipercow_environment_delete hipercow_environment_exists hipercow_environment_list hipercow_environment_show
Environment variableshipercow_envvars
Hello worldhipercow_hello
Create a hipercow roothipercow_init
Specify parallel use of coreshipercow_parallel
Get number of coreshipercow_parallel_get_cores
Set various environment variables that report the number of cores available for execution.hipercow_parallel_set_cores
Provision cluster libraryhipercow_provision
Compare installationshipercow_provision_compare
List installationshipercow_provision_check hipercow_provision_list
Purge taskshipercow_purge
Hipercow Resourceshipercow_resources
Validate a 'hipercow_resources' list for a driver.hipercow_resources_validate
Create an rrq controllerhipercow_rrq_controller
Tell workers to exit once completehipercow_rrq_stop_workers_once_idle
Submit rrq workershipercow_rrq_workers_submit
Remove a driver from a hipercow configurationhipercow_unconfigure
Cancel taskstask_cancel
Create bulk tasks from a calltask_create_bulk_call
Create bulk tasks from an expressiontask_create_bulk_expr
Create task from calltask_create_call
Create explicit tasktask_create_explicit
Create a task based on an expressiontask_create_expr
Create script tasktask_create_script
Run a tasktask_eval
Fetch task informationtask_info
List taskstask_list
Get task logtask_log_show task_log_value task_log_watch
Get task resulttask_result
Retry a tasktask_retry
Get task statustask_status
Submit a tasktask_submit
Wait for a task to completetask_wait