Package: jointlyr 0.0.1

Sangeeta Bhatia

jointlyr: Joint estimation of initial incidence and reproduction number

Provides a Stan implementation of a method to jointly estimate incidence and reproduction number.

Authors:Sangeeta Bhatia [aut, cre], Pierre Nouvellet [aut], Anne Cori [aut], Jack Wardle [aut]

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jointlyr.pdf |jointlyr.html✨
jointlyr/json (API)

Peer review:

Bug tracker:https://github.com/mrc-ide/jointlyr/issues

On CRAN:

1 exports 0.09 score 80 dependencies 1 scripts

Last updated 2 years agofrom:614603f6c5 (on master). Checks:OK: 1 NOTE: 8. Indexed: yes.

Exports:jointly_estimate

Dependencies:abindaweekbackportsBHcallrcheckmateclicoarseDataToolscodacolorspacecpp11descdistcretedistributionaldplyrEpiEstimepitrixfansifarverfitdistrplusgenericsgghighlightggplot2ggrepelgluegridExtragtableincidenceinlineisobandlabelinglatticelifecycleloomagrittrMASSMatrixMatrixModelsmatrixStatsmcmcMCMCpackmgcvmunsellnlmenumDerivpatchworkpillarpkgbuildpkgconfigplyrposteriorprocessxpspurrrquantregQuickJSRR6RColorBrewerRcppRcppEigenRcppParallelreshape2rlangrstanrstantoolsscalessodiumSparseMStanHeadersstringistringrsurvivaltensorAtibbletidyrtidyselectutf8vctrsviridisLitewithr