Package: specio 0.1.4
Robert Ashton
specio: Read Spectrum Files
Read data from Spectrum PJNZ file into R consumable format for EPP.
Authors:
specio_0.1.4.tar.gz
specio_0.1.4.zip(r-4.5)specio_0.1.4.zip(r-4.4)specio_0.1.4.zip(r-4.3)
specio_0.1.4.tgz(r-4.4-any)specio_0.1.4.tgz(r-4.3-any)
specio_0.1.4.tar.gz(r-4.5-noble)specio_0.1.4.tar.gz(r-4.4-noble)
specio_0.1.4.tgz(r-4.4-emscripten)specio_0.1.4.tgz(r-4.3-emscripten)
specio.pdf |specio.html✨
specio/json (API)
NEWS
| # Install 'specio' in R: |
| install.packages('specio', repos = c('https://mrc-ide.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mrc-ide/specio/issues
Last updated 3 years agofrom:11535cf222 (on master). Checks:OK: 3 NOTE: 4. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Aug 25 2024 |
| R-4.5-win | NOTE | Aug 25 2024 |
| R-4.5-linux | NOTE | Aug 25 2024 |
| R-4.4-win | NOTE | Aug 25 2024 |
| R-4.4-mac | NOTE | Aug 25 2024 |
| R-4.3-win | OK | Aug 25 2024 |
| R-4.3-mac | OK | Aug 25 2024 |
Exports:read_art_popread_epp_dataread_epp_subpopsread_hiv_popread_hivproj_paramread_pjn_metadataread_sptread_spuread_total_pop
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Extract ART population data from PJNZ file | read_art_pop |
| Read EPP fitting surveillance data | read_epp_data |
| Read EPP subpopulation configuration. | read_epp_subpops |
| Extract people living with HIV (PLHIV) from PJNZ file | read_hiv_pop |
| Read params from DP and PJN file required for HIV model. | read_hivproj_param |
| Get country name, iso3 code and spectrum region code from PJNZ | read_pjn_metadata |
| Read best fitting HIV incidence and prevalence data from SPT file. | read_spt |
| Read EPP uncertainty results from SPU file. | read_spu |
| Extract population data from PJNZ file | read_total_pop |
