Package: threemc 0.1.45

Patrick OToole

threemc: (Matt's) Multi-Level Model of Male Circumcision in Sub-Saharan Africa

Functions and datasets to support, and extend to other Sub-Saharan African countries, Thomas, M. et. al., 2021, A multi-level model for estimating region-age-time-type specific male circumcision coverage from household survey and health system data in South Africa, <arxiv:2108.091422>.

Authors:Matthew Thomas [aut], Jeffrey Imai-Eaton [aut], Patrick O'Toole [cre], Imperial College of Science, Technology and Medicine [cph]

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threemc.pdf |threemc.html
threemc/json (API)
NEWS

# Install 'threemc' in R:
install.packages('threemc', repos = c('https://mrc-ide.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/mrc-ide/threemc/issues

Datasets:

On CRAN:

2.98 score 16 scripts 19 exports 78 dependencies

Last updated 9 months agofrom:e10f54bd54 (on master). Checks:ERROR: 1 WARNING: 8. Indexed: yes.

TargetResultDate
Doc / VignettesFAILOct 10 2024
R-4.5-win-x86_64WARNINGOct 10 2024
R-4.5-linux-x86_64WARNINGOct 10 2024
R-4.4-win-x86_64WARNINGOct 10 2024
R-4.4-mac-x86_64WARNINGOct 10 2024
R-4.4-mac-aarch64WARNINGOct 10 2024
R-4.3-win-x86_64WARNINGOct 10 2024
R-4.3-mac-x86_64WARNINGOct 10 2024
R-4.3-mac-aarch64WARNINGOct 10 2024

Exports:compare_predictionscompute_quantilescreate_dirs_rcreate_shell_datasetfind_circ_typeminimise_fit_objnormalise_weights_kishprepare_survey_dataread_circ_datareassign_survey_levelspread_areassurvey_points_dmppt2_convert_conventionthreemc_aggregatethreemc_empirical_ratesthreemc_fit_modelthreemc_initial_parsthreemc_ppcthreemc_ppc2threemc_prepare_model_data

Dependencies:abindbackportsbootcheckmateclassclassIntclicolorspacecpp11data.tableDBIdeldirdistributionaldplyre1071evaluatefansifarvergenericsggdistggplot2gluegtablehighrisobandKernSmoothknitrlabelinglatticelifecycleloomagrittrMASSMatrixmatrixStatsmgcvmunsellmvtnormnlmenumDerivpillarpkgconfigposteriorproxypurrrquadprogR.methodsS3R.ooR.utilsR6RColorBrewerRcppRcppArmadilloRcppEigenrlangs2scalesscoringRulesscoringutilssfspspDataspdepstringistringrtensorAtibbletidyrtidyselectTMBunitsutf8vctrsviridisLitewithrwkxfunyaml