Package: threemc 0.1.45

Patrick OToole

threemc: (Matt's) Multi-Level Model of Male Circumcision in Sub-Saharan Africa

Functions and datasets to support, and extend to other Sub-Saharan African countries, Thomas, M. et. al., 2021, A multi-level model for estimating region-age-time-type specific male circumcision coverage from household survey and health system data in South Africa, <arxiv:2108.091422>.

Authors:Matthew Thomas [aut], Jeffrey Imai-Eaton [aut], Patrick O'Toole [cre], Imperial College of Science, Technology and Medicine [cph]

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NEWS

Peer review:

Bug tracker:https://github.com/mrc-ide/threemc/issues

On CRAN:

19 exports 0.91 score 78 dependencies 16 scripts

Last updated 7 months agofrom:e10f54bd54 (on master). Checks:ERROR: 1 WARNING: 8. Indexed: yes.

Exports:compare_predictionscompute_quantilescreate_dirs_rcreate_shell_datasetfind_circ_typeminimise_fit_objnormalise_weights_kishprepare_survey_dataread_circ_datareassign_survey_levelspread_areassurvey_points_dmppt2_convert_conventionthreemc_aggregatethreemc_empirical_ratesthreemc_fit_modelthreemc_initial_parsthreemc_ppcthreemc_ppc2threemc_prepare_model_data

Dependencies:abindbackportsbootcheckmateclassclassIntclicolorspacecpp11data.tableDBIdeldirdistributionaldplyre1071evaluatefansifarvergenericsggdistggplot2gluegtablehighrisobandKernSmoothknitrlabelinglatticelifecycleloomagrittrMASSMatrixmatrixStatsmgcvmunsellmvtnormnlmenumDerivpillarpkgconfigposteriorproxypurrrquadprogR.methodsS3R.ooR.utilsR6RColorBrewerRcppRcppArmadilloRcppEigenrlangs2scalesscoringRulesscoringutilssfspspDataspdepstringistringrtensorAtibbletidyrtidyselectTMBunitsutf8vctrsviridisLitewithrwkxfunyaml