Package: vimpact 0.1.6

Xiang Li

vimpact: Vaccine Impact Calculation

VIMC IMPACT CALCULATION PACKAGE. This package is mainly for the VIMC Science Team to investigate vaccination impact.

Authors:Xiang Li [aut, cre], Imperial College of Science, Technology and Medicine [cph]

vimpact_0.1.6.tar.gz
vimpact_0.1.6.zip(r-4.7)vimpact_0.1.6.zip(r-4.6)vimpact_0.1.6.zip(r-4.5)
vimpact_0.1.6.tgz(r-4.6-any)vimpact_0.1.6.tgz(r-4.5-any)
vimpact_0.1.6.tar.gz(r-4.7-any)vimpact_0.1.6.tar.gz(r-4.6-any)
vimpact_0.1.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
vimpact/json (API)
NEWS

# Install 'vimpact' in R:
install.packages('vimpact', repos = c('https://mrc-ide.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/vimc/vimpact/issues

On CRAN:

Conda:

4.92 score 4 stars 3 scripts 15 exports 39 dependencies

Last updated from:ca37541f94 (on master). Checks:7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE153
source / vignettesOK182
linux-release-x86_64NOTE156
macos-release-arm64NOTE124
macos-oldrel-arm64NOTE89
windows-develNOTE260
windows-releaseNOTE254
windows-oldrelNOTE248
wasm-releaseOK128

Exports:calculate_impactcalculate_impact_from_recipecohort_deaths_all_causeextract_vaccination_historyfetch_stochastic_datafetch_stochastic_data_year_groupsget_populationget_touchstoneimpact_by_birth_yearimpact_by_calendar_yearimpact_by_year_of_vaccination_activity_typeimpact_by_year_of_vaccination_birth_cohortimpact_by_year_of_vaccination_cohort_perspectiveimpact_by_year_of_vaccination_country_perspectiverecipe_template

Dependencies:askpassbitbit64blobclicpp11curlDBIdbplyrdplyrgenericsgetPassgluehmshttrjsonlitelifecyclelubridatemagrittrmimeopensslpillarpkgconfigpurrrR6rlangRPostgresrstudioapistringistringrsystibbletidyrtidyselecttimechangeutf8vaultrvctrswithr

Using vimpact for estimating vaccine impact

Rob Ashton, Xiang Li, Katy Gaythorpe

Rendered fromusing-vimpact.Rmdusingknitr::rmarkdownon May 05 2026.

Last update: 2025-02-26
Started: 2021-08-19

Using vimpact for estimating vaccine impact - internal

Rob Ashton, Xiang Li, Katy Gaythorpe

Rendered frominternal-impact.Rmdusingknitr::rmarkdownon May 05 2026.

Last update: 2025-02-26
Started: 2021-11-11

Using vimpact for estimating vaccine impact - VIMC members

Xiang Li

Rendered fromvignette.Rmdusingknitr::rmarkdownon May 05 2026.

Last update: 2021-11-11
Started: 2021-08-19

Readme and manuals

Help Manual

Help pageTopics
Calculate impact - requires a DB connection to montagu.calculate_impact
Calculate impact from a recipe - requires a DB connection to montagu.calculate_impact_from_recipe
Extract demographic data - all couse mortality, live birth and under5 mortality ratecohort_deaths_all_cause
Generate target, fvps, coverage for a touchstone This function pulls vaccination and population data from Montagu database, and transform them into target, coverage and fvps. There are two modes of pulling population data: 1.) through touchstone_pop parameter 2.) through demographic_source parameter touchstone_pop is one of touchstone_demographic_dataset.touchstone; this parameter is null-able, when it is null, touchstone_cov is used demographic_source is one of demographic_source.code; by default it is null, when it is not null, it rulls out touchstone_pop parameterextract_vaccination_history
Get data from stochastic tables with specified grouping and filtersfetch_stochastic_data
Get data from stochastic tables with specified grouping and filtersfetch_stochastic_data_year_groups
Extract demographic dataget_population
Determine touchstoneget_touchstone
Determine touchstone idget_touchstone_id
Calculate impact by birth year (lifetime impact)impact_by_birth_year
Calculate impact by calendar yearimpact_by_calendar_year
Calculate impact by year of vaccination: activity typeimpact_by_year_of_vaccination_activity_type
Calculate impact by year of vaccination: birth cohortimpact_by_year_of_vaccination_birth_cohort
Calculate impact by year of vaccination cohort perspectiveimpact_by_year_of_vaccination_cohort_perspective
Calculate impact by year of vaccination country perspectiveimpact_by_year_of_vaccination_country_perspective
Impact recipe templaterecipe_template